Skip to content

fix: properly close files in lineage queries and tests #4587

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Merged
merged 1 commit into from
Apr 25, 2024
Merged
Show file tree
Hide file tree
Changes from all commits
Commits
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
4 changes: 2 additions & 2 deletions src/sagemaker/lineage/query.py
Original file line number Diff line number Diff line change
Expand Up @@ -335,8 +335,8 @@ def _get_legend_line(self, component_name):

def _add_legend(self, path):
"""Embed legend to html file generated by pyvis."""
f = open(path, "r")
content = self.BeautifulSoup(f, "html.parser")
with open(path, "r") as f:
content = self.BeautifulSoup(f, "html.parser")

legend = """
<div style="display: inline-block; font-size: 1vw; font-family: verdana;
Expand Down
3 changes: 2 additions & 1 deletion tests/data/sip/training.py
Original file line number Diff line number Diff line change
Expand Up @@ -73,7 +73,8 @@ def main():
)

model_dir = os.environ.get("SM_MODEL_DIR")
pkl.dump(bst, open(model_dir + "/model.bin", "wb"))
with open(model_dir + "/model.bin", "wb") as f:
pkl.dump(bst, f)


if __name__ == "__main__":
Expand Down
4 changes: 2 additions & 2 deletions tests/integ/sagemaker/lineage/test_lineage_visualize.py
Original file line number Diff line number Diff line change
Expand Up @@ -142,8 +142,8 @@ def test_graph_visualize(sagemaker_session, extract_data_from_html):
lq_result.visualize(path="testGraph.html")

# check generated graph info
fo = open("testGraph.html", "r")
lines = fo.readlines()
with open("testGraph.html", "r") as fo:
lines = fo.readlines()
for line in lines:
if "nodes = " in line:
node = line
Expand Down
3 changes: 2 additions & 1 deletion tests/integ/sagemaker/workflow/test_workflow.py
Original file line number Diff line number Diff line change
Expand Up @@ -527,7 +527,8 @@ def test_one_step_ingestion_pipeline(

temp_flow_path = "./ingestion.flow"
with cleanup_feature_group(feature_group):
json.dump(ingestion_only_flow, open(temp_flow_path, "w"))
with open(temp_flow_path, "w") as f:
json.dump(ingestion_only_flow, f)

data_wrangler_processor = DataWranglerProcessor(
role=role,
Expand Down
6 changes: 4 additions & 2 deletions tests/integ/test_sagemaker_config.py
Original file line number Diff line number Diff line change
Expand Up @@ -66,7 +66,8 @@ def expected_merged_config():
expected_merged_config_file_path = os.path.join(
CONFIG_DATA_DIR, "expected_output_config_after_merge.yaml"
)
return yaml.safe_load(open(expected_merged_config_file_path, "r").read())
with open(expected_merged_config_file_path, "r") as f:
return yaml.safe_load(f.read())


@pytest.fixture(scope="module")
Expand Down Expand Up @@ -171,7 +172,8 @@ def test_config_download_from_s3_and_merge(
CONFIG_DATA_DIR, "sample_additional_config_for_merge.yaml"
)

config_file_1_as_yaml = open(config_file_1_local_path, "r").read()
with open(config_file_1_local_path, "r") as f:
config_file_1_as_yaml = f.read()
s3_uri_config_1 = os.path.join(s3_uri_prefix, "config_1.yaml")

# Upload S3 files in case they dont already exist
Expand Down
12 changes: 8 additions & 4 deletions tests/unit/sagemaker/local/test_local_image.py
Original file line number Diff line number Diff line change
Expand Up @@ -221,9 +221,12 @@ def test_write_config_file(LocalSession, tmpdir):
assert os.path.exists(resource_config_file)
assert os.path.exists(input_data_config_file)

hyperparameters_data = json.load(open(hyperparameters_file))
resource_config_data = json.load(open(resource_config_file))
input_data_config_data = json.load(open(input_data_config_file))
with open(hyperparameters_file) as f:
hyperparameters_data = json.load(f)
with open(resource_config_file) as f:
resource_config_data = json.load(f)
with open(input_data_config_file) as f:
input_data_config_data = json.load(f)

# Validate HyperParameters
for k, v in HYPERPARAMETERS.items():
Expand Down Expand Up @@ -280,7 +283,8 @@ def test_write_config_files_input_content_type(LocalSession, tmpdir):
sagemaker_container.write_config_files(host, HYPERPARAMETERS, input_data_config)

assert os.path.exists(input_data_config_file)
parsed_input_config = json.load(open(input_data_config_file))
with open(input_data_config_file) as f:
parsed_input_config = json.load(f)
# Validate Input Data Config
for channel in input_data_config:
assert channel["ChannelName"] in parsed_input_config
Expand Down
6 changes: 4 additions & 2 deletions tests/unit/sagemaker/serializers/test_serializers.py
Original file line number Diff line number Diff line change
Expand Up @@ -345,13 +345,15 @@ def test_data_serializer_raw(data_serializer):
input_image = image.read()
input_image_data = data_serializer.serialize(input_image)
validation_image_file_path = os.path.join(DATA_DIR, "", "cuteCat.raw")
validation_image_data = open(validation_image_file_path, "rb").read()
with open(validation_image_file_path, "rb") as f:
validation_image_data = f.read()
assert input_image_data == validation_image_data


def test_data_serializer_file_like(data_serializer):
input_image_file_path = os.path.join(DATA_DIR, "", "cuteCat.jpg")
validation_image_file_path = os.path.join(DATA_DIR, "", "cuteCat.raw")
input_image_data = data_serializer.serialize(input_image_file_path)
validation_image_data = open(validation_image_file_path, "rb").read()
with open(validation_image_file_path, "rb") as f:
validation_image_data = f.read()
assert input_image_data == validation_image_data