[MAINT] Update code for assemble of contributors records and extend listing of referenced contributors #1964

Remi-Gau · 2024-10-20T09:06:29Z

companion PR to bids website [ENH] retrieve metadata BEP leads from BIDS contributors bids-website#476
some BEP leads were not listed in contributors
move all emails of BEP leads from the BIDS website to citation.cff of the spec to have only one instance of them
add new contributors from some BEP
add contributors who contributed to some tools

codecov · 2024-10-20T09:10:29Z

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 82.65%. Comparing base (1f8487e) to head (c23f249).

Additional details and impacted files

@@           Coverage Diff           @@
##           master    #1964   +/-   ##
=======================================
  Coverage   82.65%   82.65%           
=======================================
  Files          17       17           
  Lines        1534     1534           
=======================================
  Hits         1268     1268           
  Misses        266      266

☔ View full report in Codecov by Sentry.
📢 Have feedback on the report? Share it here.

🚀 New features to boost your workflow:

❄️ Test Analytics: Detect flaky tests, report on failures, and find test suite problems.
📦 JS Bundle Analysis: Save yourself from yourself by tracking and limiting bundle sizes in JS merges.

Remi-Gau · 2024-10-21T07:50:00Z

converting to draft:

check if some of the new contributors have a github account (I know some do)
need to add a few more contributors from some recently developed BIDS tools

Remi-Gau · 2024-10-21T11:30:32Z

TODO (but for future PRs):

add github usernames to contributors who have one
update affiliations (help to know where our contributors are from)
check people who have contributed to repos on BIDS and BIDS apps github organization, tools / converters repos...
check people mentioned on BIDS papers (that probably should be listed as contributors ?)

bendhouseart

lgtm

…ing duplicates etc

=== Do not change lines below === { "chain": [], "cmd": "tools/add_contributors.py; git add -u; pre-commit run || :", "exit": 0, "extra_inputs": [], "inputs": [], "outputs": [], "pwd": "." } ^^^ Do not change lines above ^^^

mguaypaq

Some edits for consistency.

mguaypaq · 2025-05-14T17:26:12Z

.tributors

+        "orcid": "0000-0003-2828-6031"
+    },
+    "mguaypaq": {
+        "affiliation": "Montreal, Quebec, Canada",


Suggested change

"affiliation": "Montreal, Quebec, Canada",

"affiliation": "NeuroPoly Lab, Polytechnique Montréal",

mguaypaq · 2025-05-14T17:27:01Z

.all-contributorsrc

+            ],
+            "login": "mguaypaq",
+            "name": "Mathieu Guay-Paquet",
+            "profile": "https://www.pointedset.ca/"


Suggested change

"profile": "https://www.pointedset.ca/"

"profile": "https://github.com/mguaypaq"

mguaypaq · 2025-05-14T17:28:22Z

CITATION.cff

+  - given-names: Mathieu
+    family-names: Guay-Paquet
+    website: https://www.pointedset.ca/
+    affiliation: Montreal, Quebec, Canada


Suggested change

affiliation: Montreal, Quebec, Canada

affiliation: NeuroPoly Lab, Polytechnique Montréal

mguaypaq · 2025-05-14T17:30:25Z

README.md

    </tr>
    <tr>
-      <td align="center" valign="top" width="14.28%"><a href="https://github.com/josator2"><img src="https://avatars.githubusercontent.com/u/9729281?v=4?s=100" width="100px;" alt="josator2"/><br /><sub><b>josator2</b></sub></a><br /><a href="https://github.com/bids-standard/bids-specification/commits?author=josator2" title="Code">💻</a></td>
+      <td align="center" valign="top" width="14.28%"><img src="https://avatars.githubusercontent.com/u/928742?v=4?s=100" width="100px;" alt="mathieu_guay-paquet"/><br /><sub><b>mathieu_guay-paquet</b></sub><br /><a href="https://github.com/bids-standard/bids-specification/commits?author=mguaypaq" title="Documentation">📖</a></td>


Suggested change

<td align="center" valign="top" width="14.28%"><img src="https://avatars.githubusercontent.com/u/928742?v=4?s=100" width="100px;" alt="mathieu_guay-paquet"/> mathieu_guay-paquet <a href="https://github.com/bids-standard/bids-specification/commits?author=mguaypaq" title="Documentation">📖</a></td>

<td align="center" valign="top" width="14.28%"><img src="https://avatars.githubusercontent.com/u/928742?v=4?s=100" width="100px;" alt="Mathieu Guay-Paquet"/> Mathieu Guay-Paquet <a href="https://github.com/bids-standard/bids-specification/commits?author=mguaypaq" title="Documentation">📖</a></td>

mguaypaq · 2025-05-14T17:31:04Z

src/appendices/contributors.md

 | ezemikulan                                           | 💻                                     |
 | josator2                                             | 💻                                     |
+| mathieu_guay-paquet                                  | 📖                                     |


amberrhopkins · 2025-05-14T18:01:01Z

.tributors

+        "name": "Alyssa Dai",
+        "orcid": "0000-0003-0174-6800"
+    },
+    "amber_hopkins": {


CORRECTION

“amber_hopkins": {
"affiliation": “Department of Psychology, University of California Los Angeles, Los Angeles, California, United States",
"contributions": [
“doc"
],
"email": “[email protected]",
"github": "amberrhopkins",
"name": “Amber R. Hopkins",
"orcid": "0000-0002-8354-565X"
"publish_email": true
},

amberrhopkins · 2025-05-14T18:02:40Z

CITATION.cff

+    orcid: https://orcid.org/0000-0003-0174-6800
+    affiliation: origami lab, McGill university, Montreal, Québec, Canada
+    email: [email protected]
+  - given-names: Amber


CORRECTION

given-names: Amber R.
family-names: Hopkins
orcid: https://orcid.org/0000-0002-8354-565X
affiliation: Department of Psychology, University of California Los Angeles, Los Angeles, California, United States

julia-pfarr · 2025-05-14T18:17:55Z

.all-contributorsrc

+            "avatar_url": "https://avatars.githubusercontent.com/u/111446107?v=4",
+            "contributions": [
+                "code",
+                "doc"


Suggested change

"doc"

"doc",

"tool",

"example"

julia-pfarr · 2025-05-14T18:20:28Z

.tributors

+            "code",
+            "doc"
+        ],
+        "email": "[email protected]",


Suggested change

"email": "pfarr@staff.uni-marburg.de",

"email": "juliakatharina.pfarr@gmail.com",

julia-pfarr · 2025-05-14T18:20:43Z

.tributors

+        "blog": "https://github.com/julia-pfarr",
+        "contributions": [
+            "code",
+            "doc"


Suggested change

"doc"

"doc",

"tool",

"example"

julia-pfarr · 2025-05-14T18:23:43Z

CITATION.cff

+    family-names: Pfarr
+    website: https://github.com/julia-pfarr
+    orcid: https://orcid.org/0000-0003-1450-6005
+    email: [email protected]


Suggested change

email: pfarr@staff.uni-marburg.de

email: juliakatharina.pfarr@gmail.com

affiliation: McGill University

mtorabi59 · 2025-05-14T19:32:12Z

.tributors

@@ -2207,6 +2614,35 @@
        "orcid": "0000-0002-4685-0057",
        "publish_email": false
    },
+    "mtorabi59": {
+        "affiliation": "origami lab, McGill university, Montreal, Québec, Canada",


Suggested change

"affiliation": "origami lab, McGill university, Montreal, Québec, Canada",

"affiliation": "McGill University",

vhosouza

Thanks for the amazing effort. My info requires some changes, which I made as suggestions in this PR.
Cheers!

vhosouza · 2025-05-15T10:34:50Z

CITATION.cff

+  - given-names: Victor
+    family-names: Hugo Souza
+    email: [email protected]


Suggested change

- given-names: Victor

family-names: Hugo Souza

email: [email protected]

- given-names: Victor H.

family-names: Souza

website: https://vhosouza.github.io/

orcid: https://orcid.org/0000-0002-0254-4322

affiliation: Aalto University, Finland

email: [email protected]

vhosouza · 2025-05-15T10:36:01Z

.all-contributorsrc

+        {
+            "contributions": [
+                "doc"
+            ],
+            "login": "victor_hugo_souza",
+            "name": "Victor Hugo Souza"
+        },


Suggested change

{

"contributions": [

"doc"

],

"login": "victor_hugo_souza",

"name": "Victor Hugo Souza"

},

{

"contributions": [

"doc"

],

"login": "victor_h_souza",

"name": "Victor H. Souza"

},

vhosouza · 2025-05-15T10:43:41Z

.tributors

+    "victor_hugo_souza": {
+        "contributions": [
+            "doc"
+        ],
+        "email": "[email protected]",
+        "name": "Victor Hugo Souza"
+    },


Suggested change

"victor_hugo_souza": {

"contributions": [

"doc"

],

"email": "[email protected]",

"name": "Victor Hugo Souza"

},

"victor_h_souza": {

"affiliation": “Aalto University, Finland",

"blog": "https://vhosouza.github.io/",

"contributions": [

"doc"

],

"email": "[email protected]",

"github": "vhosouza",

"name": "Victor H. Souza",

"orcid": "0000-0002-0254-4322",

"publish_email": true

},

vhosouza · 2025-05-15T10:51:59Z

src/appendices/contributors.md

@@ -351,8 +389,10 @@ If you contributed to the BIDS ecosystem and your name is not listed, please add
 | Ulrike Bingel                                        | 📖                                     |
 | Vanessa Sochat                                       | 📖                                     |
 | Vasudev Raguram                                      | 💻🎨📖🔧                               |
+| Victor Hugo Souza                                    | 📖                                     |


mekline · 2025-05-15T12:07:22Z

.tributors

mekline - full name is Melissa Kline Struhl; all other details confirmed/okayed

po09i · 2025-05-17T05:15:04Z

.tributors

+    "po09i": {
+        "blog": "https://github.com/po09i",
+        "contributions": [
+            "doc"
+        ],
+        "email": "[email protected]",
+        "name": "Alexandre D'Astous",
+        "orcid": "0000-0003-0381-7334"


Everything looks good

alyssadai · 2025-05-19T02:35:49Z

.tributors

@@ -182,6 +206,23 @@
        "email": "[email protected]",
        "name": "Alizee Wickenheiser"
    },
+    "alyssadai": {
+        "affiliation": "origami lab, McGill university, Montreal, Québec, Canada",


Suggested change

"affiliation": "origami lab, McGill university, Montreal, Québec, Canada",

"affiliation": "McGill University",

guiomar · 2025-05-19T07:51:19Z

.tributors

+            "talk"
+        ],
+        "email": "[email protected]",
+        "name": "Guiomar Galán",


Suggested change

"name": "Guiomar Galán",

"name": "Guiomar Niso",

Thanks!

guiomar · 2025-05-19T07:53:38Z

CITATION.cff

@@ -530,15 +642,20 @@ authors:
    website: https://www.fil.ion.ucl.ac.uk/team/spm-team/
    orcid: https://orcid.org/0000-0003-0077-7859
    affiliation: University College London
+  - given-names: Guiomar
+    family-names: Galán


Suggested change

family-names: Galán

family-names: Niso

(it's a bit confussing with two names and two surnames :)
Thanks once more!

guiomar · 2025-05-19T08:00:29Z

src/appendices/contributors.md

@@ -215,7 +227,9 @@ If you contributed to the BIDS ecosystem and your name is not listed, please add
 | Joseph Woods                                         | 📖                                     |
 | Julia Guiomar Niso Galán                             | 🤔🎨🔍👀📋📝🔧🐛💻🔣✅💬📖💡📢         |


Suggested change

| Julia Guiomar Niso Galán | 🤔🎨🔍👀📋📝🔧🐛💻🔣✅💬📖💡📢 |

| Guiomar Niso | 🤔🎨🔍👀📋📝🔧🐛💻🔣✅💬📖💡📢 |

I shorten it here, so it's easier and matches what's on the other docs.
Thnaks for working on this, it's a challenging but very important thing to have a curated list of contributors :)

gallg · 2025-05-20T13:54:27Z

.tributors

@@ -1116,21 +1289,26 @@
        "contributions": [
            "doc"
        ],
+        "email": "[email protected]",
        "name": "Giuseppe Gallitto",


the github name is "gallg". The Orcid number is correct. Contributions is BEP035, I don't know it that should be flagged as doc, ideas or both

gallg · 2025-05-20T13:57:17Z

.tributors

+    "bids-maintenance": {
+        "bio": "Doing work here-and-there for @bids-standard",
+        "blog": "https://bids.neuroimaging.io/",
+        "name": "BIDS Maintenance User"
    },
    "balint_kincses": {


github name: "kincsesbalint". Orcid: 0000-0002-0478-6384. Orcid number can also be added to CITATION.cff

GiacomoBert · 2025-05-20T14:41:08Z

.tributors

@@ -1063,6 +1225,7 @@
        "contributions": [
            "doc"
        ],
+        "email": "[email protected]",


“GiacomoBert": { "affiliation": “Berenson-Allen Center for Noninvasive Brain Stimulation, Beth Israel Deaconess Medical Center and Harvard Medical School, Boston, MA, USA, Department of Neurology, Harvard Medical School, Boston, MA, USA", "contributions": [ “doc" ], "email": “[[email protected]](mailto:[email protected])", "github": "GiacomoBert", "name": “Giacomo Bertazzoli", "orcid": "0000-0003-1624-2576" "publish_email": true },

GiacomoBert · 2025-05-20T18:19:12Z

.tributors

@@ -2923,6 +3504,15 @@
        "orcid": "0000-0001-5153-1424",
        "publish_email": true
    },
+    "til_ole_bergmann": {
+        "affiliation": "ohannes-Gutenberg University Medical Center, Mainz Germany",


affiliation is

Johannes-Gutenberg University Medical Center, Mainz Germany

Suggested change

"affiliation": "ohannes-Gutenberg University Medical Center, Mainz Germany",

"affiliation": "Johannes-Gutenberg University Medical Center, Mainz Germany",

GiacomoBert · 2025-05-20T18:21:49Z

.tributors

+        "email": "[email protected]",
+        "name": "Til Ole Bergmann",
+        "orcid": "0000-0002-2282-6618"
+    },
    "dickscheid": {


also Friederike Breuer should be added as

"friederike_breuer": { "affiliation": "Johannes-Gutenberg University Medical Center, Mainz Germany", "contributions": [ "doc" ], "email": "[email protected]", "name": "Friederike Breuer", },

melanieganz · 2025-05-21T18:40:05Z

Thank you so much for all your efforts! I just updated my e-mail to the university one to match the affiliation.

.tributors

djarecka · 2025-06-17T13:32:55Z

.tributors

+        ],
+        "email": "[email protected]",
+        "github": "djarecka",
+        "name": "Dorota Jarecka"


Suggested change

"name": "Dorota Jarecka"

"name": "Dorota Jarecka",

"orcid": "0000-0001-8282-2988"

djarecka · 2025-06-17T13:34:52Z

CITATION.cff

+    family-names: Jarecka
+    website: https://www.linkedin.com/in/djarecka
+    affiliation: MIT, Cambridge, USA
+    email: [email protected]


Suggested change

email: [email protected]

email: [email protected]

orcid: https://orcid.org/0000-0001-8282-2988

update contributors

e8b3f93

Remi-Gau added the exclude-from-changelog This item will not feature in the automatically generated changelog label Oct 20, 2024

Remi-Gau changed the title ~~update contributors~~ [MAINT] update contributors Oct 20, 2024

Remi-Gau added 4 commits October 20, 2024 11:19

move email from website

cb5da2f

update contributors

ab980af

fixes

d0bd2e9

lint

ee61888

Remi-Gau force-pushed the contributors branch from b999731 to ee61888 Compare October 20, 2024 09:38

Remi-Gau added 7 commits October 20, 2024 13:27

update contributors BEP 20

b6d7728

update contributors BEP 23

ee28f8c

update contributors BEP 35

3a4bf1e

update contributors BEP 38

42ee0ef

update contributors BEP 37

05c949b

update avatars

b8f8207

update avatars

e10d2d1

Remi-Gau force-pushed the contributors branch from 3626e29 to e10d2d1 Compare October 20, 2024 12:25

Remi-Gau added 2 commits October 20, 2024 14:57

add script to check contributor

404bb41

update my email

15f821f

Remi-Gau marked this pull request as draft October 21, 2024 07:48

Remi-Gau added 6 commits October 21, 2024 10:02

fix

ec2439e

fix

b3d183b

add github user account

8bc65c7

add neurobagel and nipopy teams

8914317

fix

1a0a69f

update avatars

58215d1

Remi-Gau marked this pull request as ready for review October 21, 2024 11:31

bendhouseart approved these changes Oct 21, 2024

View reviewed changes

yarikoptic added 2 commits May 14, 2025 12:56

Comment out check for match of number of entries -- we might be remov…

83b1fad

…ing duplicates etc

mguaypaq approved these changes May 14, 2025

View reviewed changes

amberrhopkins reviewed May 14, 2025

View reviewed changes

julia-pfarr requested changes May 14, 2025

View reviewed changes

mtorabi59 reviewed May 14, 2025

View reviewed changes

DejanDraschkow approved these changes May 14, 2025

View reviewed changes

sdiebolt approved these changes May 15, 2025

View reviewed changes

vhosouza suggested changes May 15, 2025

View reviewed changes

mekline reviewed May 15, 2025

View reviewed changes

.tributors

Copy link

mekline May 15, 2025

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

mekline - full name is Melissa Kline Struhl; all other details confirmed/okayed

po09i reviewed May 17, 2025

View reviewed changes

alyssadai approved these changes May 19, 2025

View reviewed changes

guiomar reviewed May 19, 2025

View reviewed changes

gallg reviewed May 20, 2025

View reviewed changes

GiacomoBert reviewed May 20, 2025

View reviewed changes

Updated e-mail for myself

a12d990

balbasty reviewed May 22, 2025

View reviewed changes

.tributors Show resolved Hide resolved

yarikoptic self-assigned this Jun 11, 2025

yarikoptic added the copenhagen For discussion in Copenhagen label Jun 11, 2025

yarikoptic mentioned this pull request Jun 16, 2025

Keep CI green? bids-standard/bids-website#648

Open

djarecka reviewed Jun 17, 2025

View reviewed changes

ericearl mentioned this pull request Jun 27, 2025

output maintainers meeting openneuropet/outreach#52

Open

	"affiliation": "Montreal, Quebec, Canada",
	"affiliation": "NeuroPoly Lab, Polytechnique Montréal",

	"profile": "https://www.pointedset.ca/"
	"profile": "https://github.com/mguaypaq"

	affiliation: Montreal, Quebec, Canada
	affiliation: NeuroPoly Lab, Polytechnique Montréal

	<td align="center" valign="top" width="14.28%"><img src="https://avatars.githubusercontent.com/u/928742?v=4?s=100" width="100px;" alt="mathieu_guay-paquet"/><br /><sub><b>mathieu_guay-paquet</b></sub><br /><a href="https://github.com/bids-standard/bids-specification/commits?author=mguaypaq" title="Documentation">📖</a></td>
	<td align="center" valign="top" width="14.28%"><img src="https://avatars.githubusercontent.com/u/928742?v=4?s=100" width="100px;" alt="Mathieu Guay-Paquet"/><br /><sub><b>Mathieu Guay-Paquet</b></sub><br /><a href="https://github.com/bids-standard/bids-specification/commits?author=mguaypaq" title="Documentation">📖</a></td>

	\| mathieu_guay-paquet \| 📖 \|
	\| Mathieu Guay-Paquet \| 📖 \|

-                "doc"
+                "doc",
+                "tool",
+                "example"

	"email": "pfarr@staff.uni-marburg.de",
	"email": "juliakatharina.pfarr@gmail.com",

	email: pfarr@staff.uni-marburg.de
	email: juliakatharina.pfarr@gmail.com
	affiliation: McGill University

	"affiliation": "origami lab, McGill university, Montreal, Québec, Canada",
	"affiliation": "McGill University",

-  - given-names: Victor
-    family-names: Hugo Souza
-    email: [email protected]
+  - given-names: Victor H.
+    family-names: Souza
+    website: https://vhosouza.github.io/
+    orcid: https://orcid.org/0000-0002-0254-4322
+    affiliation: Aalto University, Finland
+    email: [email protected]

		@@ -215,7 +227,9 @@ If you contributed to the BIDS ecosystem and your name is not listed, please add
		\| Joseph Woods \| 📖 \|
		\| Julia Guiomar Niso Galán \| 🤔🎨🔍👀📋📝🔧🐛💻🔣✅💬📖💡📢 \|

	\| Julia Guiomar Niso Galán \| 🤔🎨🔍👀📋📝🔧🐛💻🔣✅💬📖💡📢 \|
	\| Guiomar Niso \| 🤔🎨🔍👀📋📝🔧🐛💻🔣✅💬📖💡📢 \|

	"affiliation": "ohannes-Gutenberg University Medical Center, Mainz Germany",
	"affiliation": "Johannes-Gutenberg University Medical Center, Mainz Germany",

	"name": "Dorota Jarecka"
	"name": "Dorota Jarecka",
	"orcid": "0000-0001-8282-2988"

	email: [email protected]
	email: [email protected]
	orcid: https://orcid.org/0000-0001-8282-2988

[MAINT] Update code for assemble of contributors records and extend listing of referenced contributors #1964

Are you sure you want to change the base?

[MAINT] Update code for assemble of contributors records and extend listing of referenced contributors #1964

Uh oh!

Conversation

Remi-Gau commented Oct 20, 2024 • edited Loading Uh oh! There was an error while loading. Please reload this page.

Uh oh!

Uh oh!

codecov bot commented Oct 20, 2024 • edited Loading Uh oh! There was an error while loading. Please reload this page.

Uh oh!

Codecov Report

Uh oh!

Remi-Gau commented Oct 21, 2024 • edited Loading Uh oh! There was an error while loading. Please reload this page.

Uh oh!

Uh oh!

Remi-Gau commented Oct 21, 2024

Uh oh!

bendhouseart left a comment

Choose a reason for hiding this comment

Uh oh!

mguaypaq left a comment

Choose a reason for hiding this comment

Uh oh!

Choose a reason for hiding this comment

Uh oh!

Choose a reason for hiding this comment

Uh oh!

Choose a reason for hiding this comment

Uh oh!

Choose a reason for hiding this comment

Uh oh!

Choose a reason for hiding this comment

Uh oh!

amberrhopkins May 14, 2025 • edited Loading Uh oh! There was an error while loading. Please reload this page.

Uh oh!

Choose a reason for hiding this comment

Uh oh!

Choose a reason for hiding this comment

Uh oh!

Choose a reason for hiding this comment

Uh oh!

Choose a reason for hiding this comment

Uh oh!

Choose a reason for hiding this comment

Uh oh!

Choose a reason for hiding this comment

Uh oh!

Choose a reason for hiding this comment

Uh oh!

vhosouza left a comment

Choose a reason for hiding this comment

Uh oh!

Choose a reason for hiding this comment

Uh oh!

Choose a reason for hiding this comment

Uh oh!

Choose a reason for hiding this comment

Uh oh!

Choose a reason for hiding this comment

Uh oh!

Choose a reason for hiding this comment

Uh oh!

Choose a reason for hiding this comment

Uh oh!

Choose a reason for hiding this comment

Uh oh!

Choose a reason for hiding this comment

Uh oh!

Choose a reason for hiding this comment

Uh oh!

Choose a reason for hiding this comment

Uh oh!

Choose a reason for hiding this comment

Uh oh!

gallg May 20, 2025 • edited Loading Uh oh! There was an error while loading. Please reload this page.

Uh oh!

Choose a reason for hiding this comment

Uh oh!

GiacomoBert May 20, 2025 • edited Loading Uh oh! There was an error while loading. Please reload this page.

Uh oh!

Remi-Gau commented Oct 20, 2024 •

edited

Loading

codecov bot commented Oct 20, 2024 •

edited

Loading

Remi-Gau commented Oct 21, 2024 •

edited

Loading

amberrhopkins May 14, 2025 •

edited

Loading

gallg May 20, 2025 •

edited

Loading

GiacomoBert May 20, 2025 •

edited

Loading