scSnippet

A hub for code snippets for single-cell data analysis.

Use

To source my code in R online, remember to append ?raw=TRUE behind the URL. e.g.

source("https://github.com/chansigit/scSnippet/blob/master/my.seurat.heatmap.R?raw=TRUE")

We hope more readers to commit your own snippets here. We all will benefit from it, isn't it? :D

deprecated

Name		Name	Last commit message	Last commit date
Cell_Cycle_Annotation		Cell_Cycle_Annotation
deprecated		deprecated
BPA development.ipynb		BPA development.ipynb
CentrifugeData.R		CentrifugeData.R
CountCellByGroup.R		CountCellByGroup.R
DEG_Analysis.R		DEG_Analysis.R
DR3d_Seurat.R		DR3d_Seurat.R
DissociationEffect.R		DissociationEffect.R
FindSubClusters.R		FindSubClusters.R
HumanGeneToMouse.R		HumanGeneToMouse.R
MultpletRates.md		MultpletRates.md
PvalVlnPlot		PvalVlnPlot
README.md		README.md
ReorderScanpyHeatmap		ReorderScanpyHeatmap
ReorderedRecoloredHeatmap		ReorderedRecoloredHeatmap
RescalingAndDR.R		RescalingAndDR.R
RunSCDS.R		RunSCDS.R
Scanpy2Seurat.pyR		Scanpy2Seurat.pyR
Seurat2Scanpy.Rpy		Seurat2Scanpy.Rpy
StackedViolin.R		StackedViolin.R
TryUMAPs.R		TryUMAPs.R
TwoGroup_DEG.R		TwoGroup_DEG.R
crosstalk.R		crosstalk.R
cytokine_list.R		cytokine_list.R
doublet.removal.R		doublet.removal.R
install.2021.08		install.2021.08
kde_density.py		kde_density.py
manual_DEG.R		manual_DEG.R
manymanycolors		manymanycolors
my.seurat.DE.R		my.seurat.DE.R
my.seurat.heatmap.R		my.seurat.heatmap.R
my.seurat.scatterplot.R		my.seurat.scatterplot.R
my_cplxheatmap.R		my_cplxheatmap.R
ortholog_conversion.R		ortholog_conversion.R
parallel_SingleR		parallel_SingleR
preprocessing.R		preprocessing.R
pseudocell.R		pseudocell.R
randomcolor.R		randomcolor.R
scds.doublets.R		scds.doublets.R
singler_annotation.R		singler_annotation.R
wait_input_until_existed.bash		wait_input_until_existed.bash