Skip to content

Add modeling for descendants of organisms #1425

@brianraymor

Description

@brianraymor

Context

See #sci-data-eng.

For cases where CELLxGENE Discover allows an organism and its descendants (Sus scrofa and its descendants), there was consensus for @jahilton's recommendation for modeling in a future release:

I would expect census_obj["census_data"]["sus_scrofa"] because in the event we eventually have data from Sus scrofa affinis, Sus scrofa majori, and Sus scrofa domesticus, a user should not have to query 3 different times to collect all of the pig data. (in general, the idea of Census is to bring the corpus together, and separating sus_scrofa_domesticus, sus_scrofa_affinis, sus_scrofa_majori, etc. would do the opposite)

This would also mean adding organism & organism_ontology_term_id into the Census Cell metadata, so a query with all pig data would include the taxon IDs

Metadata

Metadata

Assignees

Labels

census schemaSchema definition or specificationdiscoveryDiscovery work

Type

No type

Projects

No projects

Milestone

No milestone

Relationships

None yet

Development

No branches or pull requests

Issue actions