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@prathapsridharan prathapsridharan commented Mar 21, 2024

This release of the census package is being done to include an important update for tiledbsoma in 1.9.0 which includes a fix to categorical columns. To ensure that this release goes smoothly, we will:

  1. Run an acceptance test off TileDB-SOMA main branch which contains the fixes that will go into 1.9.0. We can think of this as a pre-release acceptance test
  2. After (1) passes and the tiledb folks officially release tiledbsoma==1.9.0, we will update the dependencies in this PR to point to tiledbsoma==1.9.0 and do the official release of cellxgene-census==1.12.0

@prathapsridharan prathapsridharan marked this pull request as draft March 21, 2024 20:49
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codecov bot commented Mar 25, 2024

Codecov Report

Attention: Patch coverage is 50.00000% with 1 lines in your changes are missing coverage. Please review.

Project coverage is 81.33%. Comparing base (aa1439f) to head (b1a300b).

Files Patch % Lines
...us/src/cellxgene_census/experimental/_embedding.py 0.00% 1 Missing ⚠️
Additional details and impacted files
@@           Coverage Diff           @@
##             main    #1061   +/-   ##
=======================================
  Coverage   81.33%   81.33%           
=======================================
  Files          73       73           
  Lines        5566     5566           
=======================================
  Hits         4527     4527           
  Misses       1039     1039           
Flag Coverage Δ
unittests 81.33% <50.00%> (ø)

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@prathapsridharan prathapsridharan force-pushed the psridharan/census-rel-1.12.0 branch from f97b2c5 to 1cf85aa Compare March 27, 2024 15:17
@prathapsridharan prathapsridharan force-pushed the psridharan/census-rel-1.12.0 branch from 1cf85aa to 3f734a4 Compare March 27, 2024 21:45
# ensure that the assets are readable (tiledbsoma supports backward compatible reading).
# Make sure this version does not fall behind the builder's tiledbsoma version.
"tiledbsoma~=1.8.0",
# TODO: When ready to release 1.12.0 update tiledbsoma version to 1.9.x and delete this temporary comment
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time to delete the comment?

BTW, I believe ~=1.9.1 means anything >1.9.1 and <1.10.0, so this pin should be fine (1.9.0 never existed in the wild)

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will remove comment.

I believe ~=1.9.1

Yea that is my understanding too

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One minor point/nit, but otherwise LGTM

@prathapsridharan prathapsridharan marked this pull request as ready for review March 28, 2024 15:29
@prathapsridharan prathapsridharan merged commit a5dbdef into main Mar 28, 2024
@prathapsridharan prathapsridharan deleted the psridharan/census-rel-1.12.0 branch March 28, 2024 18:06
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3 participants