Skip to content

Conversation

@prathapsridharan
Copy link
Contributor

This is one of a series of PRs to improve developer documentation for the Census repository as stated in #1109

- `cd` to the root of this repository
- `pip install -e api/python/cellxgene_census`
- To install dependencies needed to work on the [experimental](./src/cellxgene_census/experimental/) portion of the API:
`pip install -e api/python/cellxgene_census[experimental]`.
Copy link
Member

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Suggested change
`pip install -e api/python/cellxgene_census[experimental]`.
`pip install -e 'api/python/cellxgene_census[experimental]'`.

We can then remove the next line.

Copy link
Contributor Author

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Incorporated this suggestion


- Learn more about the Census API by going through the tutorials in the [notebooks](../notebooks/)

## Release
Copy link
Member

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Not sure this belongs here. While the development setup can be useful for people who want to try the Census on their machine, this is only relevant for committers.

Copy link
Contributor Author

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Removed

# conditionally import torch, as it will not be available in all test environments
try:
from torch import Tensor, float32
from torch import Tensor, float32
Copy link
Member

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

TODO: remove this once we figure out the issue.

Copy link
Contributor Author

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Reset the commit hash to remove it

@prathapsridharan prathapsridharan force-pushed the psridharan/census-dev-docs-1 branch from 273081e to e1f7817 Compare May 7, 2024 18:21
@codecov
Copy link

codecov bot commented May 7, 2024

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 91.12%. Comparing base (c796baf) to head (28ee420).
Report is 3 commits behind head on main.

Additional details and impacted files
@@           Coverage Diff           @@
##             main    #1111   +/-   ##
=======================================
  Coverage   91.12%   91.12%           
=======================================
  Files          77       77           
  Lines        5857     5857           
=======================================
  Hits         5337     5337           
  Misses        520      520           
Flag Coverage Δ
unittests 91.12% <ø> (ø)

Flags with carried forward coverage won't be shown. Click here to find out more.

☔ View full report in Codecov by Sentry.
📢 Have feedback on the report? Share it here.

@prathapsridharan prathapsridharan force-pushed the psridharan/census-dev-docs-1 branch from e1f7817 to 28ee420 Compare May 10, 2024 18:25
@prathapsridharan prathapsridharan merged commit aa698f3 into main May 13, 2024
@prathapsridharan prathapsridharan deleted the psridharan/census-dev-docs-1 branch May 13, 2024 22:45
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

3 participants