[docs] Add schema QC for schema 2.4.0 #1438
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See associated notebook in PR
Relates to #1435
QC results
Light QC on test build shows no issues
Checks
✅ High-level data is accesible and looks in order for
census["census_info"]andcensus["census_data"]✅ Expected increase in cells from latest LTS 154M to 211M
✅ Similar expected increase in other categories (datasets, donors, unique cells)
❌ Duplicated rows for
homo_sapiensandmus_musculusincensus_new["census_info"]["organisms"]✅ All assays increased in N cells, no decreases
✅ Normalized layer was properly created
✅ Normalized layer was properly created for full-gene sequencing asssays
✅ Spot checking obs and var contents across all organisms shows compliance with Discover schema 7.0.0
✅ Spot checking expression matrices across all organisms shows expected values
✅ Anndata exporting works for all organisms
Real use-case test
See this notebook for a real use case as described here
✅ No issues found