v1.17.0

What's Changed

• Put upper bound on torchdata dependency, also fix some typing issues @ivirshup in #1325
• Bump tiledbsoma pin to >=1.15.3 by @ivirshup in #1336
• Update pin on tiledb-vector-search to ~=0.11 by @mlin in #1349
• Numpy 2 support @ivirshup in #1343
• Add warning about tiledbsoma library update to docsite by @ivirshup in #1333
• [docs] Spatial documentation by @MaximilianLombardo in #1334
• Add Spatial Census Tutorial by @MaximilianLombardo in #1348
• Add 'spatial' extra install by @ivirshup in #1346
• cellxgene_census.experimental.ml modules moved into deprecated status, and will be removed in a future release. @mlin #1381
  • cellxgene_census.experimental.ml.pytorch (data loader for PyTorch) is superseded by TileDB-SOMA-ML; tutorial notebook revised accordingly.
  • cellxgene_census.experimental.ml.huggingface (Hugging Face Dataset builder and Geneformer tokenizer) will migrate to tools/models/geneformer in the git repository (not part of the PyPI package)
• Add support for getting data from census_spatial_sequencing to get_anndata, get_obs, get_var by @ivirshup in #1383

New Contributors

• @jakeyheath made their first contribution in #1335
• @alexlokshin-czi made their first contribution in #1351

Full Changelog: v1.16.2...v1.17.0