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Pull requests: chanzuckerberg/cz-benchmarks

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Pull requests list

docs: Documentation udpates for new perturb seq dataset class, task, and Replogle K562 essentials data
#373 opened Aug 11, 2025 by mlgill • Draft
chore: CCIE-4984 conform to open sourcing guidelines
#372 opened Aug 11, 2025 by wontonst Loading…
chore(deps): bump transformers from 4.49.0 to 4.53.0 in /docker/geneformer dependencies Pull requests that update a dependency file python Pull requests that update python code
#367 opened Aug 6, 2025 by dependabot bot Loading…
Creates task to calculate metrics from K562 perturbation data
#365 opened Aug 4, 2025 by polinabinder1 Loading…
18
feat: Updates to single cell perturbation datasets and related classes for new perturb seq task
#364 opened Aug 4, 2025 by mlgill Loading…
1 task
Patch/scgenept consistent data
#316 opened Jul 14, 2025 by armaos Loading…
doc: Model adapter design
#285 opened Jun 24, 2025 by saugupta1 Loading…
23
chore(deps): bump mlflow from 2.17.0 to 3.1.0 in /docker/scvi dependencies Pull requests that update a dependency file python Pull requests that update python code
#284 opened Jun 24, 2025 by dependabot bot Loading…
docs: initial draft of asset manager design
#283 opened Jun 18, 2025 by saugupta1 Loading…
1
1
docs: design for dataset compatibility checker and declarative validations
#281 opened Jun 18, 2025 by saugupta1 Loading…
1
24
V1.0 byomodel adapter v2
#273 opened Jun 10, 2025 by saugupta1 Loading…
43
PR: Add non_control_mean baseline to set_baseline() for perturbation prediction
#272 opened Jun 9, 2025 by realmjstrumillo Loading…
1
Design for BYOModel model adapter
#271 opened Jun 9, 2025 by atolopko-czi • Draft
1
test: 243-automate-model-regression-tests
#268 opened Jun 3, 2025 by ohvillasenor • Draft
chore(deps): bump torch from 2.4.1 to 2.7.0 in /docker/uce dependencies Pull requests that update a dependency file python Pull requests that update python code
#262 opened May 30, 2025 by dependabot bot Loading…
Extensibility testing [DO NOT MERGE]
#213 opened May 14, 2025 by atolopko-czi • Draft
chore: initial proposal for user feedback issue templates
#196 opened May 6, 2025 by atolopko-czi Loading…
6
feat: speedup task runtime with cuML
#190 opened May 2, 2025 by valenzuelaomar Loading…
1
11
chore(deps): bump mlflow from 2.17.0 to 2.20.3 in /docker/uce dependencies Pull requests that update a dependency file python Pull requests that update python code
#122 opened Mar 21, 2025 by dependabot bot Loading…
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