saber-em: v0.9.0

0.9.0 (2025-11-01)

✨ Features

• Add a web gui (b3bdd7a)
• instance multi-slab 3D seg, storage of AMG parameters (9fa4ff6)
• major restructure to 3D segmentation workflow (66957ea)

🐞 Bug Fixes

• make sure amg cfg is properly allocated during inference (9af571c)
• make sure amg cfg is properly allocated during inference (25d3eac)
• Make sure AMG Parameters are properly read for Tomography Workflow (d167af2)
• make sure amg parameters are properly referenced for tomo workflow (bc8a1b6)

saber-em: v0.8.0

0.8.0 (2025-10-03)

✨ Features

• 3D annotation gui and tracking of metadata for zarr files (2253097)
• Interactivity improvements for the annotation gui (966df35)
• run 2D preprocessing on tif stack (3c75d77)
• vcp dataio (6d227b4)
• workflow for fib segmentation (d53b297)

🐞 Bug Fixes

• feature improvements to the 3D gui. Ability to rotate volume. Faster reading. Linking of images (bda2cc1)
• Gui3d (0fff24d)
• improve the speed for fib segmentation, ensure correct format is saved for vcp web gui (680342a)
• improved workflow for fib segmentation (e028e62)
• speed up the loading time between frames (3758068)

saber-em: v0.7.0

0.7.0 (2025-08-19)

✨ Features

• text annotation-gui (c4f9ded)

saber-em: v0.6.1

0.6.1 (2025-08-07)

🐞 Bug Fixes

• versioning (55882a4)
• versioning (fc672ca)

saber-em: v0.6.0

0.6.0 (2025-08-07)

✨ Features

• add release-please configuration (16da577)
• add release-please configuration (6e8d558)
• Image Saving and SAM2 Mask Batching (df4ab57)
• prepare for v0.5.0 release (6cafc31)

🐞 Bug Fixes

• add README to PyPI description (d9556fb)
• dynamic versioning (cf280dd)
• dynamic versioning (d1a67c8)
• make sure inference state only read once (f6963e7)
• make sure inference state only read once (3672dce)
• make sure packages get submitted to pypi (231361e)
• make sure search pattern is correct (2ffbb53)
• release-please (10e89a6)
• release-please (90052a3)
• rename release-please config file (9403ffb)
• rename release-please config file (03fe8c2)
• resolve release please CI (43a6847)
• resolve release please CI (dd26ff5)
• use PAT for release-please to bypass org permissions (c135a97)
• use PAT for release-please to bypass org permissions (24b18d3)
• use the organization token (b4b9d11)
• versioning (9710436)
• versioning (4f54535)

📝 Documentation

• better description for importing data to copick (e5e9b64)

🧹 Miscellaneous Chores

• CCIE-4984 conform to open sourcing guidelines (0badd9c)
• CCIE-4984 conform to open sourcing guidelines (34fdf98)
• main: release saber 0.3.0 (0121f88)
• main: release saber 0.3.0 (d94c1ed)
• main: release saber 0.6.0 (a47a28a)
• main: release saber 0.6.0 (c043558)
• main: release saber 0.7.0 (99b3ddb)
• main: release saber 0.7.0 (824ca17)
• main: release saber 0.7.1 (210ee32)
• main: release saber 0.7.1 (7c79b94)
• main: release saber 0.7.2 (3bee497)
• main: release saber 0.7.2 (4993077)
• main: release saber-em 0.2.0 (0c1858c)
• main: release saber-em 0.2.0 (fcf3161)