Pull baselines #2
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| name: Pull baselines | |
| on: | |
| workflow_dispatch: | |
| inputs: | |
| name: | |
| description: 'Pull Baselines' | |
| required: false | |
| publish: | |
| description: 'Pull baselines forecasts' | |
| type: boolean | |
| required: false | |
| default: true | |
| schedule: | |
| - cron: "20 19 * * 3" | |
| permissions: | |
| contents: write | |
| pull-requests: write | |
| jobs: | |
| pull_baselines: | |
| if: github.repository_owner == 'cdcepi' | |
| runs-on: macOS-latest | |
| steps: | |
| - name: Checkout repo | |
| uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| - name: Setup R | |
| uses: r-lib/actions/setup-r@v2 | |
| with: | |
| use-public-rspm: true | |
| - name: Install dependencies | |
| run: | | |
| install.packages("pak") | |
| pak::pkg_install(c( | |
| "readr", "dplyr", "tidyr", | |
| "lubridate", "fs", | |
| "github::hubverse-org/hubValidations")) | |
| shell: Rscript {0} | |
| - name: Pull baseline csv files | |
| run: Rscript auxiliary-data/pull-flusight-baselines.R | |
| - name: Show validation output in logs (for debugging) | |
| run: cat validation_result.md || echo "No validation_result.md found" | |
| - name: Read validation result | |
| id: validation | |
| run: | | |
| { | |
| echo 'body<<EOF' | |
| cat validation_result.md | |
| echo 'EOF' | |
| } >> "$GITHUB_OUTPUT" | |
| - name: Commit changes and create PR 🚀 | |
| if: ${{ inputs.publish || github.event_name == 'schedule' }} | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| run: | | |
| PR_DATETIME=$(date +'%Y-%m-%d_%H-%M-%S') | |
| git config user.name "github-actions[bot]" | |
| git config user.email "41898282+github-actions[bot]@users.noreply.github.com" | |
| git checkout -b create/baselines/"$PR_DATETIME" | |
| git add . | |
| git commit -m "Pull baseline forecasts" | |
| git push --set-upstream origin create/baselines/"$PR_DATETIME" | |
| gh pr create --title "Add new baseline forecasts" \ | |
| --body "${{ steps.validation.outputs.body }}" \ | |
| --base main \ | |
| --head create/baselines/"$PR_DATETIME" | |
| shell: bash |