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[DSEW CPR] Pass through python-black #1577

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[DSEW CPR] Pass through python-black #1577

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645b7c0
Pass pull.py through python-black
dshemetov Apr 13, 2022
15cb355
Pass run.py through black
dshemetov Apr 14, 2022
1f4025b
Pass constants through black
dshemetov Apr 14, 2022
8f7f3a5
Pass test_pull.py through black
dshemetov Apr 14, 2022
16625fe
Minor style fix
dshemetov Apr 20, 2022
096307e
Fix questionable styling choices by black
dshemetov Apr 20, 2022
340a4e8
Merge branch 'main' into ds/cpr-style
dshemetov Apr 20, 2022
0de568d
Make linter happy
dshemetov Apr 25, 2022
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63 changes: 32 additions & 31 deletions dsew_community_profile/delphi_dsew_community_profile/constants.py
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Original file line number Diff line number Diff line change
Expand Up @@ -8,6 +8,7 @@

INTERP_LENGTH = 5


@dataclass
class Transform:
"""Transformation filters for interpreting a particular sheet in the workbook."""
Expand All @@ -18,35 +19,32 @@ class Transform:
geo_id_select: function = None
geo_id_apply: function = None


T_FIRST = lambda df: df[df.columns[0]]
TRANSFORMS = {
t.name: t for t in [
t.name: t
for t in [
Transform(
name="Regions",
level="hhs",
geo_id_select=lambda df: df.index.to_series(),
geo_id_apply=lambda x: x.replace("Region ", "")
geo_id_apply=lambda x: x.replace("Region ", ""),
),
Transform(
name="States",
level="state",
geo_id_select=T_FIRST,
geo_id_apply=lambda x: x.lower()
name="States", level="state", geo_id_select=T_FIRST, geo_id_apply=lambda x: x.lower()
),
Transform(
name="CBSAs",
level="msa",
row_filter=lambda df: df['CBSA type'] == "Metropolitan",
row_filter=lambda df: df["CBSA type"] == "Metropolitan",
geo_id_select=T_FIRST,
geo_id_apply=lambda x: f"{x}"
geo_id_apply=lambda x: f"{x}",
),
Transform(
name="Counties",
level="county",
geo_id_select=T_FIRST,
geo_id_apply=lambda x: f"{x:05}"
)
]}
name="Counties", level="county", geo_id_select=T_FIRST, geo_id_apply=lambda x: f"{x:05}"
),
]
}

# key: signal id, string pattern used to find column to report as signal
# is_rate: originating signal is a percentage (e.g. test positivity)
Expand All @@ -56,52 +54,54 @@ class Transform:
# api_prop_name: name to use in API for proportion signal
SIGNALS = {
"total": {
"is_rate" : False,
"is_rate": False,
"api_name": "covid_naat_num_7dav",
"make_prop": False,
"is_cumulative" : False
"is_cumulative": False,
},
"positivity": {
"is_rate" : True,
"is_rate": True,
"api_name": "covid_naat_pct_positive_7dav",
"make_prop": False,
"is_cumulative" : False
"is_cumulative": False,
},
"confirmed covid-19 admissions": {
"is_rate" : False,
"is_rate": False,
"api_name": "confirmed_admissions_covid_1d_7dav",
"make_prop": True,
"api_prop_name": "confirmed_admissions_covid_1d_prop_7dav",
"is_cumulative" : False
"is_cumulative": False,
},
"fully vaccinated": {
"is_rate" : False,
"is_rate": False,
"api_name": "people_full_vaccinated",
"make_prop": False,
"is_cumulative" : True
"is_cumulative": True,
},
"booster dose since": {
"is_rate" : False,
"is_rate": False,
"api_name": "people_booster_doses",
"make_prop": False,
"is_cumulative" : True
"is_cumulative": True,
},
"booster doses administered": {
"is_rate" : False,
"is_rate": False,
"api_name": "booster_doses_admin_7dav",
"make_prop": False,
"is_cumulative" : False
"is_cumulative": False,
},
"doses administered": {
"is_rate" : False,
"is_rate": False,
"api_name": "doses_admin_7dav",
"make_prop": False,
"is_cumulative" : False
}
"is_cumulative": False,
},
}

COUNTS_7D_SIGNALS = {
key for key, value in SIGNALS.items() if not ((value["is_rate"]) or (value["is_cumulative"]))
}

COUNTS_7D_SIGNALS = {key for key, value in SIGNALS.items() \
if not((value["is_rate"]) or (value["is_cumulative"]))}

def make_signal_name(key, is_prop=False):
"""Convert a signal key to the corresponding signal name for the API.
Expand All @@ -113,6 +113,7 @@ def make_signal_name(key, is_prop=False):
return SIGNALS[key]["api_prop_name"]
return SIGNALS[key]["api_name"]


NEWLINE = "\n"
IS_PROP = True
NOT_PROP = False
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