Open
Description
Solution to issue cannot be found in the documentation.
- I checked the documentation.
Issue
While building the directory tree, repgrep experiences multiple segfaults. Replacing the internal ripgrep with the generic version doesn't segfault, and this only happens with the conda version of code-server. I think it may be due to some issue with the build.
Here's the bug on the code-server repo:
Installed packages
# packages in environment at /sc/arion/work/fultob01/conda/envs/py3.9:
#
# Name Version Build Channel
_go_select 2.3.0 cgo conda-forge
_libgcc_mutex 0.1 conda_forge conda-forge
_openmp_mutex 4.5 2_kmp_llvm conda-forge
_r-mutex 1.0.1 anacondar_1 conda-forge
_sysroot_linux-64_curr_repodata_hack 3 h5bd9786_13 conda-forge
aioeasywebdav 2.4.0 py39hf3d152e_1001 conda-forge
aiohttp 3.8.3 py39hb9d737c_0 conda-forge
aiosignal 1.2.0 pyhd8ed1ab_0 conda-forge
alsa-lib 1.2.7.2 h166bdaf_0 conda-forge
amply 0.1.5 pyhd8ed1ab_0 conda-forge
anyio 3.6.1 pyhd8ed1ab_1 conda-forge
appdirs 1.4.4 pyh9f0ad1d_0 conda-forge
archive_goate 2.1 py39_0 bfh
argon2-cffi 21.3.0 pyhd8ed1ab_0 conda-forge
argon2-cffi-bindings 21.2.0 py39hb9d737c_2 conda-forge
arpack 3.7.0 hdefa2d7_2 conda-forge
arrow 1.2.3 pyhd8ed1ab_0 conda-forge
asttokens 2.0.8 pyhd8ed1ab_0 conda-forge
async-timeout 4.0.2 pyhd8ed1ab_0 conda-forge
async_generator 1.10 py_0 conda-forge
atk-1.0 2.36.0 h3371d22_4 conda-forge
attmap 0.13.2 pyhd8ed1ab_0 conda-forge
attrs 22.1.0 pyh71513ae_1 conda-forge
awscli 1.25.85 py39hf3d152e_0 conda-forge
azure-common 1.1.28 pyhd8ed1ab_0 conda-forge
azure-core 1.25.1 pyhd8ed1ab_0 conda-forge
azure-storage-blob 12.13.1 pyhd8ed1ab_0 conda-forge
babel 2.10.3 pyhd8ed1ab_0 conda-forge
backcall 0.2.0 pyh9f0ad1d_0 conda-forge
backports 1.0 py_2 conda-forge
backports.functools_lru_cache 1.6.4 pyhd8ed1ab_0 conda-forge
bcftools 1.16 hfe4b78e_0 bioconda
bcrypt 3.2.2 py39hb9d737c_0 conda-forge
beautifulsoup4 4.11.1 pyha770c72_0 conda-forge
binaryornot 0.4.4 py_1 conda-forge
binutils_impl_linux-64 2.36.1 h193b22a_2 conda-forge
binutils_linux-64 2.36 hf3e587d_10 conda-forge
bioconductor-annotationdbi 1.56.1 r41hdfd78af_0 bioconda
bioconductor-biobase 2.54.0 r41hc0cfd56_2 bioconda
bioconductor-biocfilecache 2.2.0 r41hdfd78af_0 bioconda
bioconductor-biocgenerics 0.40.0 r41hdfd78af_0 bioconda
bioconductor-biocio 1.4.0 r41hdfd78af_0 bioconda
bioconductor-biocparallel 1.28.3 r41hc247a5b_1 bioconda
bioconductor-biomart 2.50.0 r41hdfd78af_0 bioconda
bioconductor-biostrings 2.62.0 r41hc0cfd56_2 bioconda
bioconductor-bsgenome 1.62.0 r41hdfd78af_0 bioconda
bioconductor-delayedarray 0.20.0 r41hc0cfd56_2 bioconda
bioconductor-dnacopy 1.68.0 r41hefde4a7_2 bioconda
bioconductor-gdsfmt 1.30.0 r41hc247a5b_2 bioconda
bioconductor-genesis 2.24.2 r41hc0cfd56_0 bioconda
bioconductor-genomeinfodb 1.30.0 r41hdfd78af_0 bioconda
bioconductor-genomeinfodbdata 1.2.7 r41hdfd78af_2 bioconda
bioconductor-genomicalignments 1.30.0 r41hc0cfd56_2 bioconda
bioconductor-genomicfeatures 1.46.1 r41hdfd78af_0 bioconda
bioconductor-genomicranges 1.46.1 r41hc0cfd56_1 bioconda
bioconductor-gwastools 1.40.0 r41hdfd78af_0 bioconda
bioconductor-iranges 2.28.0 r41hc0cfd56_2 bioconda
bioconductor-keggrest 1.34.0 r41hdfd78af_0 bioconda
bioconductor-matrixgenerics 1.6.0 r41hdfd78af_0 bioconda
bioconductor-mungesumstats 1.2.0 r41hdfd78af_0 bioconda
bioconductor-quantsmooth 1.60.0 r41hdfd78af_0 bioconda
bioconductor-rhtslib 1.26.0 r41hc0cfd56_2 bioconda
bioconductor-rsamtools 2.10.0 r41hc247a5b_2 bioconda
bioconductor-rtracklayer 1.54.0 r41h171f361_4 bioconda
bioconductor-s4vectors 0.32.4 r41hc0cfd56_0 bioconda
bioconductor-seqarray 1.34.0 r41hc247a5b_2 bioconda
bioconductor-seqvartools 1.32.0 r41hdfd78af_0 bioconda
bioconductor-snprelate 1.28.0 r41hc247a5b_2 bioconda
bioconductor-summarizedexperiment 1.24.0 r41hdfd78af_0 bioconda
bioconductor-variantannotation 1.40.0 r41hc0cfd56_2 bioconda
bioconductor-xvector 0.34.0 r41hc0cfd56_2 bioconda
bioconductor-zlibbioc 1.40.0 r41hc0cfd56_2 bioconda
biopython 1.79 py39hb9d737c_2 conda-forge
black 22.8.0 py39hf3d152e_0 conda-forge
blas 2.116 openblas conda-forge
blas-devel 3.9.0 16_linux64_openblas conda-forge
bleach 5.0.1 pyhd8ed1ab_0 conda-forge
blinker 1.5 pyhd8ed1ab_0 conda-forge
blis 0.9.0 h166bdaf_0 conda-forge
boto 2.49.0 py_0 conda-forge
boto3 1.24.84 pyhd8ed1ab_0 conda-forge
botocore 1.27.84 pyhd8ed1ab_0 conda-forge
bottleneck 1.3.5 py39hd257fcd_0 conda-forge
brotlipy 0.7.0 py39hb9d737c_1004 conda-forge
bwidget 1.9.14 ha770c72_1 conda-forge
bzip2 1.0.8 h7f98852_4 conda-forge
c-ares 1.18.1 h7f98852_0 conda-forge
ca-certificates 2022.9.24 ha878542_0 conda-forge
cachetools 5.2.0 pyhd8ed1ab_0 conda-forge
cairo 1.16.0 ha12eb4b_1010 conda-forge
certifi 2022.9.24 pyhd8ed1ab_0 conda-forge
cffi 1.15.1 py39he91dace_0 conda-forge
chardet 5.0.0 py39hf3d152e_0 conda-forge
charset-normalizer 2.1.1 pyhd8ed1ab_0 conda-forge
click 8.1.3 py39hf3d152e_0 conda-forge
code-server 4.6.0 ha770c72_0 conda-forge
coin-or-cbc 2.10.8 h3786ebc_0 conda-forge
coin-or-cgl 0.60.6 h6f57e76_2 conda-forge
coin-or-clp 1.17.7 hc56784d_2 conda-forge
coin-or-osi 0.108.7 h2720bb7_2 conda-forge
coin-or-utils 2.11.6 h202d8b1_2 conda-forge
coincbc 2.10.8 0_metapackage conda-forge
colorama 0.4.4 pyh9f0ad1d_0 conda-forge
commonmark 0.9.1 py_0 conda-forge
conda 22.9.0 py39hf3d152e_1 conda-forge
conda-build 3.22.0 py39hf3d152e_2 conda-forge
conda-package-handling 1.9.0 py39hb9d737c_0 conda-forge
configargparse 1.5.3 pyhd8ed1ab_0 conda-forge
connection_pool 0.0.3 pyhd3deb0d_0 conda-forge
cookiecutter 2.1.1 pyh6c4a22f_0 conda-forge
cryptography 36.0.2 py39hd97740a_1 conda-forge
curl 7.85.0 h7bff187_0 conda-forge
dataclasses 0.8 pyhc8e2a94_3 conda-forge
datrie 0.8.2 py39h3811e60_3 conda-forge
dbus 1.13.6 h5008d03_3 conda-forge
debugpy 1.6.3 py39h5a03fae_0 conda-forge
decorator 5.1.1 pyhd8ed1ab_0 conda-forge
defusedxml 0.7.1 pyhd8ed1ab_0 conda-forge
dill 0.3.5.1 pyhd8ed1ab_0 conda-forge
docutils 0.16 py39hf3d152e_3 conda-forge
dpath 2.0.6 py39hf3d152e_1 conda-forge
drmaa 0.7.9 py_1000 conda-forge
dropbox 11.34.0 pyhd8ed1ab_0 conda-forge
eli5 0.13.0 pyhd8ed1ab_0 conda-forge
entrypoints 0.4 pyhd8ed1ab_0 conda-forge
et_xmlfile 1.0.1 py_1001 conda-forge
exa 0.10.1 habb4d0f_0 conda-forge
executing 1.1.0 pyhd8ed1ab_0 conda-forge
expat 2.4.9 h27087fc_0 conda-forge
fftw 3.3.10 nompi_hf0379b8_105 conda-forge
filechunkio 1.8 py_2 conda-forge
filelock 3.8.0 pyhd8ed1ab_0 conda-forge
flippyr 0.5.3 pyh5e36f6f_0 bioconda
flit-core 3.7.1 pyhd8ed1ab_0 conda-forge
font-ttf-dejavu-sans-mono 2.37 hab24e00_0 conda-forge
font-ttf-inconsolata 3.000 h77eed37_0 conda-forge
font-ttf-source-code-pro 2.038 h77eed37_0 conda-forge
font-ttf-ubuntu 0.83 hab24e00_0 conda-forge
fontconfig 2.14.0 hc2a2eb6_1 conda-forge
fonts-conda-ecosystem 1 0 conda-forge
fonts-conda-forge 1 0 conda-forge
freetype 2.12.1 hca18f0e_0 conda-forge
fribidi 1.0.10 h36c2ea0_0 conda-forge
frozenlist 1.3.1 py39hb9d737c_0 conda-forge
ftputil 5.0.4 pyhd8ed1ab_0 conda-forge
future 0.18.2 py39hf3d152e_5 conda-forge
g-ir-build-tools 1.74.0 py39h3707be2_0 conda-forge
g-ir-host-tools 1.74.0 h1def2ed_0 conda-forge
gcc 10.4.0 hb92f740_10 conda-forge
gcc_impl_linux-64 10.4.0 h7ee1905_16 conda-forge
gcc_linux-64 10.4.0 h9215b83_10 conda-forge
gdk-pixbuf 2.42.8 hff1cb4f_1 conda-forge
gettext 0.19.8.1 h27087fc_1009 conda-forge
gfortran_impl_linux-64 10.4.0 h44b2e72_16 conda-forge
gfortran_linux-64 10.4.0 h69d5af5_10 conda-forge
gh 2.16.1 ha8f183a_0 conda-forge
ghostscript 9.54.0 h27087fc_2 conda-forge
giflib 5.2.1 h36c2ea0_2 conda-forge
git 2.38.0 pl5321h5fbbf19_0 conda-forge
gitdb 4.0.9 pyhd8ed1ab_0 conda-forge
gitpython 3.1.27 pyhd8ed1ab_0 conda-forge
glib 2.74.0 h6239696_0 conda-forge
glib-tools 2.74.0 h6239696_0 conda-forge
glob2 0.7 py_0 conda-forge
globus-cli 3.8.0 pyhd8ed1ab_0 conda-forge
globus-sdk 3.11.0 pyhd8ed1ab_0 conda-forge
gmp 6.2.1 h58526e2_0 conda-forge
go 1.18.5 h5acc617_1 conda-forge
gobject-introspection 1.74.0 py39h4e09a1e_0 conda-forge
google-api-core 2.10.1 pyhd8ed1ab_0 conda-forge
google-api-python-client 2.63.0 pyhd8ed1ab_0 conda-forge
google-auth 2.12.0 pyh1a96a4e_0 conda-forge
google-auth-httplib2 0.1.0 pyhd8ed1ab_1 conda-forge
google-cloud-core 2.3.2 pyhd8ed1ab_0 conda-forge
google-cloud-storage 2.5.0 pyh6c4a22f_0 conda-forge
google-crc32c 1.1.2 py39h8db88ab_3 conda-forge
google-resumable-media 2.4.0 pyhd8ed1ab_0 conda-forge
googleapis-common-protos 1.56.4 py39hf3d152e_0 conda-forge
graphite2 1.3.13 h58526e2_1001 conda-forge
graphviz 3.0.0 h5abf519_1 conda-forge
grpc-cpp 1.48.1 h05bd8bd_1 conda-forge
grpcio 1.48.1 py39h712372c_1 conda-forge
gsl 2.7 he838d99_0 conda-forge
gst-plugins-base 1.20.3 h57caac4_2 conda-forge
gstreamer 1.20.3 hd4edc92_2 conda-forge
gtk2 2.24.33 h90689f9_2 conda-forge
gts 0.7.6 h64030ff_2 conda-forge
gxx_impl_linux-64 10.4.0 h7ee1905_16 conda-forge
gxx_linux-64 10.4.0 h6e491c6_10 conda-forge
harfbuzz 4.2.0 h40b6f09_0 conda-forge
htop 3.2.1 h0f457ee_0 conda-forge
htslib 1.16 h6bc39ce_0 bioconda
httplib2 0.20.4 pyhd8ed1ab_0 conda-forge
hub 2.14.2 h35146e1_2 conda-forge
icu 69.1 h9c3ff4c_0 conda-forge
idna 3.4 pyhd8ed1ab_0 conda-forge
imagemagick 7.1.0_29 pl5321heb7c40d_0 conda-forge
importlib-metadata 4.11.4 py39hf3d152e_0 conda-forge
importlib_metadata 4.11.4 hd8ed1ab_0 conda-forge
importlib_resources 5.9.0 pyhd8ed1ab_0 conda-forge
iniconfig 1.1.1 pyh9f0ad1d_0 conda-forge
ipdb 0.13.9 pyhd8ed1ab_0 conda-forge
ipykernel 6.16.0 pyh210e3f2_0 conda-forge
ipython 8.5.0 pyh41d4057_1 conda-forge
ipython_genutils 0.2.0 py_1 conda-forge
ipywidgets 8.0.2 pyhd8ed1ab_1 conda-forge
isodate 0.6.1 pyhd8ed1ab_0 conda-forge
jbig 2.1 h7f98852_2003 conda-forge
jdcal 1.4.1 py_0 conda-forge
jedi 0.18.1 pyhd8ed1ab_2 conda-forge
jinja2 3.1.2 pyhd8ed1ab_1 conda-forge
jinja2-time 0.2.0 pyhd8ed1ab_3 conda-forge
jmespath 0.10.0 pyh9f0ad1d_0 conda-forge
joblib 1.2.0 pyhd8ed1ab_0 conda-forge
jpeg 9e h166bdaf_2 conda-forge
json5 0.9.5 pyh9f0ad1d_0 conda-forge
jsonschema 4.16.0 pyhd8ed1ab_0 conda-forge
julia 1.8.1 h6f5dd7c_0 conda-forge
jupyter 1.0.0 py39hf3d152e_7 conda-forge
jupyter_client 7.3.5 pyhd8ed1ab_0 conda-forge
jupyter_console 6.4.4 pyhd8ed1ab_0 conda-forge
jupyter_core 4.11.1 py39hf3d152e_0 conda-forge
jupyter_server 1.19.1 pyhd8ed1ab_0 conda-forge
jupyterlab 3.4.7 pyhd8ed1ab_0 conda-forge
jupyterlab_pygments 0.2.2 pyhd8ed1ab_0 conda-forge
jupyterlab_server 2.15.2 pyhd8ed1ab_0 conda-forge
jupyterlab_widgets 3.0.3 pyhd8ed1ab_0 conda-forge
kernel-headers_linux-64 3.10.0 h4a8ded7_13 conda-forge
keyutils 1.6.1 h166bdaf_0 conda-forge
krb5 1.19.3 h3790be6_0 conda-forge
lbzip2 2.5 0 conda-forge
ld_impl_linux-64 2.36.1 hea4e1c9_2 conda-forge
lerc 4.0.0 h27087fc_0 conda-forge
libabseil 20220623.0 cxx17_h48a1fff_4 conda-forge
libarchive 3.5.2 hccf745f_1 conda-forge
libblas 3.9.0 16_linux64_openblas conda-forge
libcblas 3.9.0 16_linux64_openblas conda-forge
libclang 13.0.1 default_hc23dcda_0 conda-forge
libcrc32c 1.1.2 h9c3ff4c_0 conda-forge
libcurl 7.85.0 h7bff187_0 conda-forge
libdeflate 1.13 h166bdaf_0 conda-forge
libedit 3.1.20191231 he28a2e2_2 conda-forge
libev 4.33 h516909a_1 conda-forge
libevent 2.1.10 h9b69904_4 conda-forge
libffi 3.4.2 h7f98852_5 conda-forge
libgcc-devel_linux-64 10.4.0 h74af60c_16 conda-forge
libgcc-ng 12.1.0 h8d9b700_16 conda-forge
libgd 2.3.3 h283352f_2 conda-forge
libgfortran-ng 12.1.0 h69a702a_16 conda-forge
libgfortran5 12.1.0 hdcd56e2_16 conda-forge
libgirepository 1.74.0 ha2a38d2_0 conda-forge
libgit2 1.5.0 h6529ace_0 conda-forge
libglib 2.74.0 h7a41b64_0 conda-forge
libgomp 12.1.0 h8d9b700_16 conda-forge
libiconv 1.17 h166bdaf_0 conda-forge
liblapack 3.9.0 16_linux64_openblas conda-forge
liblapacke 3.9.0 16_linux64_openblas conda-forge
liblief 0.12.2 h27087fc_0 conda-forge
libllvm11 11.1.0 he0ac6c6_4 conda-forge
libllvm13 13.0.1 hf817b99_2 conda-forge
libmamba 0.26.0 h0dd8ff0_0 conda-forge
libmambapy 0.26.0 py39hd55135b_0 conda-forge
libnghttp2 1.47.0 hdcd2b5c_1 conda-forge
libnl 3.7.0 h166bdaf_0 conda-forge
libnsl 2.0.0 h7f98852_0 conda-forge
libogg 1.3.4 h7f98852_1 conda-forge
libopenblas 0.3.21 pthreads_h78a6416_3 conda-forge
libopenblas-ilp64 0.3.21 pthreads_h44c56fb_3 conda-forge
libopus 1.3.1 h7f98852_1 conda-forge
libpng 1.6.38 h753d276_0 conda-forge
libpq 14.5 hd77ab85_0 conda-forge
libprotobuf 3.21.7 h6239696_0 conda-forge
librsvg 2.52.5 h0a9e6e8_3 conda-forge
libsanitizer 10.4.0 hde28e3b_16 conda-forge
libsodium 1.0.18 h36c2ea0_1 conda-forge
libsolv 0.7.22 h6239696_0 conda-forge
libsqlite 3.39.4 h753d276_0 conda-forge
libssh2 1.10.0 haa6b8db_3 conda-forge
libstdcxx-devel_linux-64 10.4.0 h74af60c_16 conda-forge
libstdcxx-ng 12.1.0 ha89aaad_16 conda-forge
libtiff 4.4.0 h0e0dad5_3 conda-forge
libtool 2.4.6 h9c3ff4c_1008 conda-forge
libunwind 1.6.2 h9c3ff4c_0 conda-forge
libutf8proc 2.7.0 h7f98852_0 conda-forge
libuuid 2.32.1 h14c3975_1000 conda-forge
libuv 1.43.0 h7f98852_0 conda-forge
libvorbis 1.3.7 h9c3ff4c_0 conda-forge
libwebp 1.2.4 h522a892_0 conda-forge
libwebp-base 1.2.4 h166bdaf_0 conda-forge
libxcb 1.13 h7f98852_1004 conda-forge
libxkbcommon 1.0.3 he3ba5ed_0 conda-forge
libxml2 2.9.12 h885dcf4_1 conda-forge
libxslt 1.1.33 h0ef7038_3 conda-forge
libzlib 1.2.12 h166bdaf_4 conda-forge
lineedit 0.1.6 pypi_0 pypi
llvm-openmp 14.0.4 he0ac6c6_0 conda-forge
logmuse 0.2.6 pyh8c360ce_0 conda-forge
lxml 4.8.0 py39hb9d737c_2 conda-forge
lz4-c 1.9.3 h9c3ff4c_1 conda-forge
lzo 2.10 h516909a_1000 conda-forge
make 4.3 hd18ef5c_1 conda-forge
markupsafe 2.1.1 py39hb9d737c_1 conda-forge
matplotlib-inline 0.1.6 pyhd8ed1ab_0 conda-forge
mbedtls 3.2.1 h27087fc_0 conda-forge
metis 5.1.0 h58526e2_1006 conda-forge
miller 6.4.0 ha770c72_0 conda-forge
mistune 2.0.4 pyhd8ed1ab_0 conda-forge
more-itertools 8.14.0 pyhd8ed1ab_0 conda-forge
mpfr 4.1.0 h9202a9a_1 conda-forge
msrest 0.7.1 pyhd8ed1ab_0 conda-forge
multidict 6.0.2 py39hb9d737c_1 conda-forge
mypy_extensions 0.4.3 py39hf3d152e_5 conda-forge
mysql-common 8.0.30 haf5c9bc_1 conda-forge
mysql-libs 8.0.30 h28c427c_1 conda-forge
nbclassic 0.4.4 pyhd8ed1ab_0 conda-forge
nbclient 0.6.8 pyhd8ed1ab_0 conda-forge
nbconvert 7.1.0 pyhd8ed1ab_0 conda-forge
nbconvert-core 7.1.0 pyhd8ed1ab_0 conda-forge
nbconvert-pandoc 7.1.0 pyhd8ed1ab_0 conda-forge
nbformat 5.6.1 pyhd8ed1ab_0 conda-forge
ncurses 6.3 h27087fc_1 conda-forge
nest-asyncio 1.5.6 pyhd8ed1ab_0 conda-forge
networkx 2.8.7 pyhd8ed1ab_0 conda-forge
ninja 1.11.0 h924138e_0 conda-forge
nlopt 2.7.1 py39h04df310_1 conda-forge
nodejs 16.14.2 h784f1fd_0 conda-forge
nomkl 1.0 h5ca1d4c_0 conda-forge
notebook 6.4.12 pyha770c72_0 conda-forge
notebook-shim 0.1.0 pyhd8ed1ab_0 conda-forge
nspr 4.32 h9c3ff4c_1 conda-forge
nss 3.78 h2350873_0 conda-forge
numexpr 2.8.3 py39h194a79d_100 conda-forge
numpy 1.23.3 py39hba7629e_0 conda-forge
oauth2client 4.1.3 py_0 conda-forge
oauthlib 3.2.1 pyhd8ed1ab_0 conda-forge
openblas 0.3.21 pthreads_h320a7e8_3 conda-forge
openblas-ilp64 0.3.21 pthreads_h3d04fff_3 conda-forge
openjdk 11.0.1 h516909a_1016 conda-forge
openjpeg 2.4.0 hb52868f_1 conda-forge
openlibm 0.8.1 h7f98852_0 conda-forge
openpyxl 3.0.10 py39hb9d737c_1 conda-forge
openssl 1.1.1q h166bdaf_0 conda-forge
p7zip 16.02 h9c3ff4c_1001 conda-forge
packaging 21.3 pyhd8ed1ab_0 conda-forge
pandas 1.5.0 py39h4661b88_0 conda-forge
pandoc 2.19.2 ha770c72_0 conda-forge
pandocfilters 1.5.0 pyhd8ed1ab_0 conda-forge
pango 1.50.7 hbd2fdc8_0 conda-forge
paramiko 2.11.0 pyhd8ed1ab_0 conda-forge
parso 0.8.3 pyhd8ed1ab_0 conda-forge
patch 2.7.6 h7f98852_1002 conda-forge
patchelf 0.15.0 h58526e2_0 conda-forge
pathspec 0.10.1 pyhd8ed1ab_0 conda-forge
patsy 0.5.2 pyhd8ed1ab_0 conda-forge
pbzip2 1.1.13 0 conda-forge
pcre 8.45 h9c3ff4c_0 conda-forge
pcre2 10.37 hc3806b6_1 conda-forge
peppy 0.35.2 pyhd8ed1ab_0 conda-forge
perl 5.32.1 2_h7f98852_perl5 conda-forge
pexpect 4.8.0 pyh9f0ad1d_2 conda-forge
pickleshare 0.7.5 py_1003 conda-forge
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snakemake 7.14.2 hdfd78af_0 bioconda
snakemake-minimal 7.14.2 pyhdfd78af_0 bioconda
sniffio 1.3.0 pyhd8ed1ab_0 conda-forge
snpeff 5.1 hdfd78af_2 bioconda
soupsieve 2.3.2.post1 pyhd8ed1ab_0 conda-forge
sqlite 3.39.4 h4ff8645_0 conda-forge
squashfs-tools 4.4 hd0129a2_3 conda-forge
stack_data 0.5.1 pyhd8ed1ab_0 conda-forge
statsmodels 0.13.2 py39hd257fcd_0 conda-forge
stone 3.3.1 pyhd8ed1ab_0 conda-forge
stopit 1.1.2 py_0 conda-forge
suitesparse 5.10.1 h9e50725_1 conda-forge
sysroot_linux-64 2.17 h4a8ded7_13 conda-forge
tabulate 0.8.10 pyhd8ed1ab_0 conda-forge
tar 1.34 ha1f6473_0 conda-forge
tbb 2021.6.0 h924138e_0 conda-forge
terminado 0.16.0 pyh41d4057_0 conda-forge
testpath 0.6.0 pyhd8ed1ab_0 conda-forge
text-unidecode 1.3 py_0 conda-forge
threadpoolctl 3.1.0 pyh8a188c0_0 conda-forge
tinycss2 1.1.1 pyhd8ed1ab_0 conda-forge
tk 8.6.12 h27826a3_0 conda-forge
tktable 2.10 hb7b940f_3 conda-forge
tmux 3.3 h385fc29_0 conda-forge
toml 0.10.2 pyhd8ed1ab_0 conda-forge
tomli 2.0.1 pyhd8ed1ab_0 conda-forge
toolz 0.12.0 pyhd8ed1ab_0 conda-forge
toposort 1.7 pyhd8ed1ab_0 conda-forge
tornado 6.2 py39hb9d737c_0 conda-forge
tqdm 4.64.1 pyhd8ed1ab_0 conda-forge
traitlets 5.4.0 pyhd8ed1ab_0 conda-forge
typed-ast 1.5.4 py39hb9d737c_0 conda-forge
typing-extensions 4.3.0 hd8ed1ab_0 conda-forge
typing_extensions 4.3.0 pyha770c72_0 conda-forge
tzdata 2022d h191b570_0 conda-forge
ubiquerg 0.6.2 pyhd8ed1ab_0 conda-forge
unidecode 1.3.6 pyhd8ed1ab_0 conda-forge
uritemplate 4.1.1 pyhd8ed1ab_0 conda-forge
urllib3 1.26.11 pyhd8ed1ab_0 conda-forge
urwid 2.1.2 py39hb9d737c_6 conda-forge
urwid_readline 0.13 pyhd8ed1ab_0 conda-forge
veracitools 0.1.3 py_0 conda-forge
vim 9.0.0335 py39pl5321h20e6244_0 conda-forge
visidata 2.8 pyhd8ed1ab_0 conda-forge
wcwidth 0.2.5 pyh9f0ad1d_2 conda-forge
webencodings 0.5.1 py_1 conda-forge
websocket-client 1.4.1 pyhd8ed1ab_0 conda-forge
wheel 0.37.1 pyhd8ed1ab_0 conda-forge
widgetsnbextension 4.0.3 pyhd8ed1ab_0 conda-forge
wrapt 1.14.1 py39hb9d737c_0 conda-forge
xlrd 2.0.1 pyhd8ed1ab_3 conda-forge
xmlrunner 1.7.7 py_0 conda-forge
xorg-kbproto 1.0.7 h14c3975_1002 conda-forge
xorg-libice 1.0.10 h516909a_0 conda-forge
xorg-libsm 1.2.3 hd9c2040_1000 conda-forge
xorg-libx11 1.7.2 h7f98852_0 conda-forge
xorg-libxau 1.0.9 h14c3975_0 conda-forge
xorg-libxdmcp 1.1.3 h7f98852_0 conda-forge
xorg-libxext 1.3.4 h7f98852_1 conda-forge
xorg-libxpm 3.5.13 h7f98852_0 conda-forge
xorg-libxrender 0.9.10 h7f98852_1003 conda-forge
xorg-libxt 1.2.1 h7f98852_2 conda-forge
xorg-renderproto 0.11.1 h14c3975_1002 conda-forge
xorg-xextproto 7.3.0 h14c3975_1002 conda-forge
xorg-xproto 7.0.31 h7f98852_1007 conda-forge
xz 5.2.6 h166bdaf_0 conda-forge
yaml 0.2.5 h7f98852_2 conda-forge
yaml-cpp 0.7.0 h27087fc_2 conda-forge
yarl 1.7.2 py39hb9d737c_2 conda-forge
yte 1.5.1 py39hf3d152e_0 conda-forge
zeromq 4.3.4 h9c3ff4c_1 conda-forge
zipp 3.8.1 pyhd8ed1ab_0 conda-forge
zlib 1.2.12 h166bdaf_4 conda-forge
zstd 1.5.2 h6239696_4 conda-forgeEnvironment info
active environment : py3.9
active env location : /sc/arion/work/fultob01/conda/envs/py3.9
shell level : 1
user config file : /hpc/users/fultob01/.condarc
populated config files : /hpc/users/fultob01/.condarc
conda version : 4.10.3
conda-build version : not installed
python version : 3.9.5.final.0
virtual packages : __linux=3.10.0=0
__glibc=2.17=0
__unix=0=0
__archspec=1=x86_64
base environment : /sc/arion/work/fultob01/conda/miniconda3 (writable)
conda av data dir : /sc/arion/work/fultob01/conda/miniconda3/etc/conda
conda av metadata url : None
channel URLs : https://conda.anaconda.org/conda-forge/linux-64
https://conda.anaconda.org/conda-forge/noarch
https://conda.anaconda.org/bioconda/linux-64
https://conda.anaconda.org/bioconda/noarch
https://repo.anaconda.com/pkgs/main/linux-64
https://repo.anaconda.com/pkgs/main/noarch
https://repo.anaconda.com/pkgs/r/linux-64
https://repo.anaconda.com/pkgs/r/noarch
package cache : /sc/arion/work/fultob01/conda/pkgs
envs directories : /sc/arion/work/fultob01/conda/envs
/sc/arion/work/fultob01/conda/miniconda3/envs
/hpc/users/fultob01/.conda/envs
platform : linux-64
user-agent : conda/4.10.3 requests/2.25.1 CPython/3.9.5 Linux/3.10.0-957.10.1.el7.x86_64 centos/7.6.1810 glibc/2.17
UID:GID : 21268:31387
netrc file : None
offline mode : False