Bump the julia-dependencies group across 2 directories with 7 updates

[dependabot]

Updates the requirements on Distributions, CSV, MLDatasets, Literate, ExpectationMaximization, StatsPlots and StableRNGs to permit the latest version.
Updates Distributions to 0.25.125

Release notes

Sourced from Distributions's releases.

v0.25.125

Distributions v0.25.125

Diff since v0.25.124

Merged pull requests:

• Add sufficient statistics and MLE for Chi and Chisq (#1997) (@​devmotion)

Commits

• cc1a9fa Add sufficient statistics and MLE for Chi and Chisq (#1997)
• 46ef6a3 Fix BinomialTPESampler Stirling correction sign error (#2053)
• da420cd Implementing Hypergeometric sampling to remove RFunctions dependency (#1994)
• 196d79b Bump codecov/codecov-action from 5 to 6 (#2048)
• 8c7dd0d Simplify pdf formula in SkewNormal docstring (#2046)
• bd05c70 Bump julia-actions/cache from 2 to 3 (#2043)
• aaa6f49 Add docstring for univariate gradlogpdf (#2042)
• 71309bc Bump actions/checkout from 5 to 6 (#2037)
• d90e7ab Fix R test references and make them reproducible (#2007)
• f1ff9e8 minor numerical improvement to logpdf(::Skellam) (#2034)
• Additional commits viewable in compare view

Updates CSV to 0.10.16

Release notes

Sourced from CSV's releases.

v0.10.16

CSV v0.10.16

Diff since v0.10.15

Merged pull requests:

• Bump codecov/codecov-action from 4 to 5 (#1149) (@​dependabot[bot])
• fix INT128_MIN write (#1152) (@​belous-dp)
• Update examples.md to use ZipArchives (#1158) (@​nhz2)
• fix compress=true with IOBuffer (#1177) (#1178) (@​quinnj)
• Fix usage of internal @check macro (#1179) (@​nickrobinson251)

Closed issues:

• missingsstring does not behave as documented (#1148)
• INT128_MIN write error (#1151)
• CSV.jl segfaults under R (#1154)
• compress test seems broken (#1177)

Commits

• 9ab387e Fix usage of internal @check macro (#1179)
• 7819c85 fix compress=true with IOBuffer (#1177) (#1178)
• 4f8c505 Update examples.md to use ZipArchives (#1158)
• 5ed46a0 Bump codecov/codecov-action from 4 to 5 (#1149)
• 55a5689 fix INT128_MIN write (#1152)
• 7f4fc2b Bump version to 0.10.15
• 72d8c31 fix decchar handling in writecell() for AbstractFloat (#1109)
• f39dd59 Fix reading gzipped file in Julia 1.11 on Windows (#1144)
• 4590e5d Fix CI badge in README
• 900e177 Update Project.toml to 0.10.14 (#1134)
• Additional commits viewable in compare view

Updates MLDatasets to 0.7.21

Release notes

Sourced from MLDatasets's releases.

v0.7.21

MLDatasets v0.7.21

Diff since v0.7.20

Merged pull requests:

• Add AmazonComputers and AmazonPhoto graph datasets (#249) (@​Uneeb808)

Commits

• 259d2eb Bump version from 0.7.20 to 0.7.21
• 476fe9b Add AmazonComputers and AmazonPhoto graph datasets (#249)
• 6234114 Bump version from 0.7.19 to 0.7.20
• 91bc2ec Maintainance (#248)
• c4e5781 Update version to 0.7.19 and JLD2 dependency
• b53b3dd Update EMNIST download URL and docstring (#247)
• 556529c chore: bump version for release (#244)
• 34b0482 CompatHelper: bump compat for JLD2 to 0.5, (keep existing compat) (#243)
• 7adcce3 Update Project.toml
• aa55d80 Adding AQSOL Dataset (#240)
• Additional commits viewable in compare view

Updates Literate to 2.21.0

Release notes

Sourced from Literate's releases.

v2.21.0

See CHANGELOG.md for notable changes.

See CHANGELOG.md for notable changes.

Diff since v2.20.1

Changelog

Sourced from Literate's changelog.

[v2.21.0] - 2025-11-19

Changed

• Allow IOCapture version 1. (#280)

[v2.20.1] - 2024-10-17

Fixed

• Errors from code evaluation (with continue_on_error = true) are now properly displayed with showerror. (#261)

[v2.20.0] - 2024-10-16

Added

• A new keyword argument configuration continue_on_error::Bool = false has been added which controls the behavior of code execution errors. By default (continue_on_error = false) execution errors are re-thrown by Literate (as before). If continue_on_error = true is set the error is used as the block result and execution continues with following blocks. (#201, #257)
• Literate now replaces Documenter-style admonitions when generating notebook output (#259). Concretely,

  # !!! note
  #     A note.
  !!! warn "Warning title text"
  A warning.
  

  is replaced with

  # > **Note**
  # >
  # > A note.
  > Warning title text
  >
  > A warning.
  

[v2.19.1] - 2024-09-13

Fixed

• Set :SOURCE_PATH in the task local storage to the output file when executing code so that recursive include works as expected. (#251, #252)

[v2.19.0] - 2024-07-11

Changed

• Literate.markdown, Literate.notebook, and Literate.script are marked as public in Julia version that support the public keyword. (#248)

[v2.18.0] - 2024-04-17

Added

• Literate will now remove DocumenterInterlinks.jl

... (truncated)

Commits

• a86869f Release 2.21.0 (#281)
• 5b41365 Support IOCapture 1.x (#280)
• 8bde981 Bump actions/checkout from 4 to 5 (#279)
• da4c384 Clarify return values. (#277)
• 0d308e4 Update README links
• 5ea086c Add formatting commit to blame ignore list
• 5d1b491 Apply Runic formatting (#266)
• 51cee54 Bump codecov/codecov-action from 4 to 5 (#265)
• 5c15d88 Set version to 2.20.1.
• c4ac614 Use showerror for showing captured errors (#261)
• Additional commits viewable in compare view

Updates ExpectationMaximization to 0.2.4

Release notes

Sourced from ExpectationMaximization's releases.

v0.2.4

ExpectationMaximization v0.2.4

Diff since v0.2.3

Merged pull requests:

• Create dependabot.yml (#15) (@​abhro)

Closed issues:

• Fitting a beta mixture fails with no method found (#9)

Commits

• 5c0ab04 canonical
• 7016091 favicon path
• 25a89c9 enlarge rtol to pass test
• 82ca692 spelling + rm nighly + favicon
• fad5980 Merge branch 'master' of https://github.com/dmetivie/ExpectationMaximization.jl
• 6cee94e logo
• 65b54d2 remove Real annotation in E-step => simpler is actually more generic in Julia!
• 0094065 Merge pull request #15 from abhro/patch-1
• 19650d0 Update action versions
• 4cec676 Create dependabot.yml
• Additional commits viewable in compare view

Updates StatsPlots to 0.15.8

Changelog

Sourced from StatsPlots's changelog.

StatsPlots.jl NEWS

0.10

• Rename package from StatPlots to StatsPlots

0.7 current version

0.7.3

• fixed out of bound error with violin and boxplot
• fixed title location in corrplot
• better handling of NaN and Inf
• recipe for hclust dendrogram (clustering visualization)
• dataviewer recipe for interactive GUIs

0.7.2

• fix stack overflow with @df and begin ... end blocks
• avoid recomputing data unnecessarily in @df

0.7.1

• remove Loess dependency
• fix hygien macro issue in @df
• add curly bracket syntax for automatic naming of groups
• add cols() to select all columns

0.7.0

• remove DataFrames dependency
• improve tick handling in correlation plots
• add support for discrete distributions
• add automatic legend with @df
• allow passing columns of a data table programmatically with cols

0.6.0

• deprecate the plot(df, :x, :y) syntax
• complete the removal of groupederror
• remove shadederror
• suppress axis labels in marginalhist

0.5.1

• remove groupederror, as that is now in it's own package
• add qqnorm and qqplot
• fix 2d density plots

0.5.0

• major reconfiguring of the support for tables:
  • change the syntax to @df mydataframe plot(:a, :b)
  • allows using DataFrames automatically in user recipes

... (truncated)

Commits

• 9db7d09 bump DS and Interp compat, + StatsPlots version (#569)
• 44200aa Merge pull request #564 from Jonas-a-Zimmermann/PermuteInsteadOfOrientation
• 1ef19e9 Update README.md
• 1c80878 Changed Orientation to Permute
• 7cfe9c1 Update README.md
• e34f65e Bump codecov/codecov-action from 3 to 4 (#548)
• bb65b7c bump Project.toml
• b1311cc Merge pull request #546 from JuliaPlots/compathelper/new_version/2023-11-25-0...
• 710d428 CompatHelper: bump compat for Interpolations to 0.15, (keep existing compat)
• 15fc66b Bump actions/checkout from 3 to 4 (#542)
• Additional commits viewable in compare view

Updates Distributions to 0.25.125

Release notes

Sourced from Distributions's releases.

v0.25.125

Distributions v0.25.125

Diff since v0.25.124

Merged pull requests:

• Add sufficient statistics and MLE for Chi and Chisq (#1997) (@​devmotion)

Commits

• cc1a9fa Add sufficient statistics and MLE for Chi and Chisq (#1997)
• 46ef6a3 Fix BinomialTPESampler Stirling correction sign error (#2053)
• da420cd Implementing Hypergeometric sampling to remove RFunctions dependency (#1994)
• 196d79b Bump codecov/codecov-action from 5 to 6 (#2048)
• 8c7dd0d Simplify pdf formula in SkewNormal docstring (#2046)
• bd05c70 Bump julia-actions/cache from 2 to 3 (#2043)
• aaa6f49 Add docstring for univariate gradlogpdf (#2042)
• 71309bc Bump actions/checkout from 5 to 6 (#2037)
• d90e7ab Fix R test references and make them reproducible (#2007)
• f1ff9e8 minor numerical improvement to logpdf(::Skellam) (#2034)
• Additional commits viewable in compare view

Updates ExpectationMaximization to 0.2.4

Release notes

Sourced from ExpectationMaximization's releases.

v0.2.4

ExpectationMaximization v0.2.4

Diff since v0.2.3

Merged pull requests:

• Create dependabot.yml (#15) (@​abhro)

Closed issues:

• Fitting a beta mixture fails with no method found (#9)

Commits

• 5c0ab04 canonical
• 7016091 favicon path
• 25a89c9 enlarge rtol to pass test
• 82ca692 spelling + rm nighly + favicon
• fad5980 Merge branch 'master' of https://github.com/dmetivie/ExpectationMaximization.jl
• 6cee94e logo
• 65b54d2 remove Real annotation in E-step => simpler is actually more generic in Julia!
• 0094065 Merge pull request #15 from abhro/patch-1
• 19650d0 Update action versions
• 4cec676 Create dependabot.yml
• Additional commits viewable in compare view

Updates StableRNGs to 1.0.4

Commits

• fc6df37 copy-in Random.ltm52 which was deleted from Random (for shuffle) (#35)
• dcc5201 add 1.9, 1.10, 1.11 to CI, and rm 1.4 on macOS (#28)
• a584e78 Create dependabot.yml and update action versions (#31)
• f1b00d7 Bump version (#34)
• f626dcb import Random.Sampler (#30)
• 147f522 Update badges on README.md (#27)
• 18aa75f Fix method ambiguity error of shuffle! with AbstractArray{Bool} on Julia ...
• 7e5c4a8 Fix streams of randn and randexp on Julia >= 1.11 (#22)
• 9af20f9 add TagBot.yml file (#21)
• d4f375f Add weekly CI run (#19)
• Additional commits viewable in compare view

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