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@eastgenomics

East Genomics

Bringing together genomic medicine across the East Midlands and East of England

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  1. eggd_tso500 eggd_tso500 Public

    Runs the Illumina TSO500 local analysis app.

    Shell 5 2

  2. athena athena Public

    Provides HTML reports with detailed coverage analysis for clinical NGS data.

    HTML 5 2

  3. eggd_mosdepth eggd_mosdepth Public

    mosdepth (DNAnexus Platform App)

    Shell 4

  4. Ploutos Ploutos Public archive

    Code for the DNAnexus billing project.

    Python 4

  5. eggd_staraligner eggd_staraligner Public

    Shell 4

  6. eggd_generate_variant_workbook eggd_generate_variant_workbook Public

    DNAnexus app for generating xlsx variant workbooks

    Python 3

Repositories

Showing 10 of 256 repositories
  • eggd_eunomia_workflow Public
    eastgenomics/eggd_eunomia_workflow’s past year of commit activity
    0 0 0 0 Updated Jul 30, 2025
  • eggd_conductor_configs Public

    Repository of eggd_conductor app and assay config files

    eastgenomics/eggd_conductor_configs’s past year of commit activity
    0 0 4 0 Updated Jul 30, 2025
  • eggd_vcf_rescue Public

    DNAneuxs app to rescue filtered out variants against known sites or non-PASS

    eastgenomics/eggd_vcf_rescue’s past year of commit activity
    Shell 2 MIT 0 0 0 Updated Jul 29, 2025
  • eggd_sompy Public
    eastgenomics/eggd_sompy’s past year of commit activity
    Shell 1 MIT 0 2 0 Updated Jul 29, 2025
  • eggd_generate_fusion_workbook Public

    Workbook app for generating Excel workbook from Eunomia pipeline output

    eastgenomics/eggd_generate_fusion_workbook’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Jul 29, 2025
  • egg4_dias_TWE_config Public

    Config for the Dias TWE assay

    eastgenomics/egg4_dias_TWE_config’s past year of commit activity
    1 0 0 0 Updated Jul 29, 2025
  • eggd_dias_single_workflow Public

    Workflow definition for Dias single

    eastgenomics/eggd_dias_single_workflow’s past year of commit activity
    2 0 0 0 Updated Jul 29, 2025
  • eggd_bclconvert Public

    DNAnexus app of bclconvert

    eastgenomics/eggd_bclconvert’s past year of commit activity
    Shell 0 MIT 0 1 0 Updated Jul 29, 2025
  • eggd_multiqc Public

    DNAnexus app to run MultiQC

    eastgenomics/eggd_multiqc’s past year of commit activity
    Shell 1 0 0 0 Updated Jul 28, 2025
  • eggd_mosdepth Public

    mosdepth (DNAnexus Platform App)

    eastgenomics/eggd_mosdepth’s past year of commit activity
    Shell 4 0 3 0 Updated Jul 28, 2025
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