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add species easyconfig parameter to VEP easyblock #3121

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Merged
ocaisa merged 2 commits into from
Feb 1, 2024
Merged

add species easyconfig parameter to VEP easyblock #3121

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b45512c
Install only selected species in VEP
Jan 31, 2024
403bbaf
Allow species as an easyconfig option for VEP easyblock
Feb 1, 2024
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4 changes: 2 additions & 2 deletions easybuild/easyblocks/v/vep.py
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Original file line number Diff line number Diff line change
Expand Up @@ -97,8 +97,8 @@ def install_step(self):
# l: Bio::DB::HTS, should be provided via EasyBuild
# p: plugins
'--AUTO af',
# install all species
'--SPECIES all',
# install selected species
'--SPECIES cyprinus_carpio_carpio',
# don't update VEP during installation
'--NO_UPDATE',
# location to install Perl API modules into
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