Clang-9.0.1-GCCcore-8.3.0.eb fails to install

[alexandermichels]

I was unable to get Clang-9.0.1-GCCcore-8.3.0.eb to install. Had lots of success installing other stuff (especially foss-2019b), but can't get Clang installed and don't have any experience with clang.

I'm assuming related to #14836

Terminal output:

> eb Clang-9.0.1-GCCcore-8.3.0.eb --robot
== Temporary log file in case of crash /data/cigi/cjw-easybuild/tmp/eb-uzy5bsf1/easybuild-4qmkx_w0.log
== found valid index for /usr/local/easybuild/easyconfigs, so using it...
== found valid index for /usr/local/easybuild/easyconfigs, so using it...
== resolving dependencies ...
== processing EasyBuild easyconfig /usr/local/easybuild/easyconfigs/c/Clang/Clang-9.0.1-GCCcore-8.3.0.eb
== building and installing Clang/9.0.1-GCCcore-8.3.0...
== fetching files...
== creating build dir, resetting environment...
== ... (took 2 secs)
== unpacking...
== ... (took 5 secs)
== patching...
== preparing...
== ... (took 1 secs)
== configuring...
== ... (took 51 secs)
== building...
== ... (took 4 mins 13 secs)
== FAILED: Installation ended unsuccessfully (build directory: /data/cigi/cjw-easybuild/easybuild/build/Clang/9.0.1/GCCcore-8.3.0): build failed (first 300 chars): cmd " make  -j 4 " exited with exit code 2 and output:
/data/cigi/cjw-easybuild/easybuild/software/CMake/3.15.3-GCCcore-8.3.0/bin/cmake -S/data/cigi/cjw-easybuild/easybuild/build/Clang/9.0.1/GCCcore-8.3.0/llvm-9.0.1.src -B/data/cigi/cjw-easybuild/easybuild/build/Clang/9.0.1/GCCcore-8.3.0/llvm.obj.1  (took 5 mins 14 secs)
== Results of the build can be found in the log file(s) /data/cigi/cjw-easybuild/tmp/eb-uzy5bsf1/easybuild-Clang-9.0.1-20220215.110630.PmYwB.log
ERROR: Build of /usr/local/easybuild/easyconfigs/c/Clang/Clang-9.0.1-GCCcore-8.3.0.eb failed (err: 'build failed (first 300 chars): cmd " make  -j 4 " exited with exit code 2 and output:\n/data/cigi/cjw-easybuild/easybuild/software/CMake/3.15.3-GCCcore-8.3.0/bin/cmake -S/data/cigi/cjw-easybuild/easybuild/build/Clang/9.0.1/GCCcore-8.3.0/llvm-9.0.1.src -B/data/cigi/cjw-easybuild/easybuild/build/Clang/9.0.1/GCCcore-8.3.0/llvm.obj.1 ')

The log for the run:
easybuild-Clang-9.0.1-20220215.110630.PmYwB.log

End of the log for convenience:

/data/cigi/cjw-easybuild/easybuild/software/binutils/2.32-GCCcore-8.3.0/bin/ranlib -D ../../libLLVMDebugInfoPDB.a
make[2]: Leaving directory '/data/cigi/cjw-easybuild/easybuild/build/Clang/9.0.1/GCCcore-8.3.0/llvm.obj.1'
[ 15%] Built target LLVMDebugInfoPDB
make[1]: Leaving directory '/data/cigi/cjw-easybuild/easybuild/build/Clang/9.0.1/GCCcore-8.3.0/llvm.obj.1'
make: *** [Makefile:155: all] Error 2
 (at easybuild/tools/run.py:577 in parse_cmd_output)
== 2022-02-15 11:11:45,577 build_log.py:265 INFO ... (took 4 mins 13 secs)
== 2022-02-15 11:11:45,577 filetools.py:1876 INFO Removing lock /data/cigi/cjw-easybuild/easybuild/software/.locks/_data_cigi_cjw-easybuild_easybuild_software_Clang_9.0.1-GCCcore-8.3.0.lock...
== 2022-02-15 11:11:45,578 filetools.py:358 INFO Path /data/cigi/cjw-easybuild/easybuild/software/.locks/_data_cigi_cjw-easybuild_easybuild_software_Clang_9.0.1-GCCcore-8.3.0.lock successfully removed.
== 2022-02-15 11:11:45,578 filetools.py:1880 INFO Lock removed: /data/cigi/cjw-easybuild/easybuild/software/.locks/_data_cigi_cjw-easybuild_easybuild_software_Clang_9.0.1-GCCcore-8.3.0.lock
== 2022-02-15 11:11:45,578 easyblock.py:3701 WARNING build failed (first 300 chars): cmd " make  -j 4 " exited with exit code 2 and output:
/data/cigi/cjw-easybuild/easybuild/software/CMake/3.15.3-GCCcore-8.3.0/bin/cmake -S/data/cigi/cjw-easybuild/easybuild/build/Clang/9.0.1/GCCcore-8.3.0/llvm-9.0.1.src -B/data/cigi/cjw-easybuild/easybuild/build/Clang/9.0.1/GCCcore-8.3.0/llvm.obj.1 
== 2022-02-15 11:11:45,579 easyblock.py:302 INFO Closing log for application name Clang version 9.0.1

---

System information:

> eb --version

This is EasyBuild 4.4.1 (framework: 4.4.1, easyblocks: 4.4.1) on host easybuild.

> lsb_release -a

No LSB modules are available.
Distributor ID:	Ubuntu
Description:	Ubuntu 20.04.3 LTS
Release:	20.04
Codename:	focal

Any help would be appreciated!

[branfosj]

Error

[ 13%] Building CXX object projects/compiler-rt/lib/sanitizer_common/CMakeFiles/RTSanitizerCommon.x86_64.dir/sanitizer_platform_limits_posix.cc.o
cd /data/cigi/cjw-easybuild/easybuild/build/Clang/9.0.1/GCCcore-8.3.0/llvm.obj.1/projects/compiler-rt/lib/sanitizer_common && /data/cigi/cjw-easybuild/easybuild/software/GCCcore/8.3.0/bin/g++  -DHAVE_RPC_XDR_H=1 -D_DEBUG -D_GNU_SOURCE -D__STDC_CONSTANT_MACROS -D__STDC_FORMAT_MACROS -D__STDC_LIMIT_MACROS -I/data/cigi/cjw-easybuild/easybuild/build/Clang/9.0.1/GCCcore-8.3.0/llvm.obj.1/projects/compiler-rt/lib/sanitizer_common -I/data/cigi/cjw-easybuild/easybuild/build/Clang/9.0.1/GCCcore-8.3.0/llvm-9.0.1.src/projects/compiler-rt/lib/sanitizer_common -I/data/cigi/cjw-easybuild/easybuild/software/libxml2/2.9.9-GCCcore-8.3.0/include/libxml2 -I/data/cigi/cjw-easybuild/easybuild/build/Clang/9.0.1/GCCcore-8.3.0/llvm.obj.1/include -I/data/cigi/cjw-easybuild/easybuild/build/Clang/9.0.1/GCCcore-8.3.0/llvm-9.0.1.src/include -I/data/cigi/cjw-easybuild/easybuild/build/Clang/9.0.1/GCCcore-8.3.0/llvm-9.0.1.src/projects/compiler-rt/lib/sanitizer_common/..  -O2 -ftree-vectorize -fno-math-errno -fPIC -fvisibility-inlines-hidden -Werror=date-time -std=c++11 -Wall -Wextra -Wno-unused-parameter -Wwrite-strings -Wcast-qual -Wno-missing-field-initializers -pedantic -Wno-long-long -Wimplicit-fallthrough -Wno-maybe-uninitialized -Wno-class-memaccess -Wno-noexcept-type -Wdelete-non-virtual-dtor -Wno-comment -ffunction-sections -fdata-sections -Wall -std=c++11 -Wno-unused-parameter -O3    -UNDEBUG  -m64 -fPIC -fno-builtin -fno-exceptions -fomit-frame-pointer -funwind-tables -fno-stack-protector -fvisibility=hidden -fno-lto -O3 -g -Wno-variadic-macros -Wno-non-virtual-dtor -fno-rtti -Wframe-larger-than=570 -o CMakeFiles/RTSanitizerCommon.x86_64.dir/sanitizer_platform_limits_posix.cc.o -c /data/cigi/cjw-easybuild/easybuild/build/Clang/9.0.1/GCCcore-8.3.0/llvm-9.0.1.src/projects/compiler-rt/lib/sanitizer_common/sanitizer_platform_limits_posix.cc
In file included from /data/cigi/cjw-easybuild/easybuild/build/Clang/9.0.1/GCCcore-8.3.0/llvm-9.0.1.src/projects/compiler-rt/lib/sanitizer_common/sanitizer_platform_limits_posix.cc:162:
/data/cigi/cjw-easybuild/easybuild/build/Clang/9.0.1/GCCcore-8.3.0/llvm-9.0.1.src/projects/compiler-rt/lib/sanitizer_common/sanitizer_internal_defs.h:342:72: error: size of array assertion_failed__1131 is negative
     typedef char IMPL_PASTE(assertion_failed_##_, line)[2*(int)(pred)-1]
                                                                        ^
/data/cigi/cjw-easybuild/easybuild/build/Clang/9.0.1/GCCcore-8.3.0/llvm-9.0.1.src/projects/compiler-rt/lib/sanitizer_common/sanitizer_internal_defs.h:336:30: note: in expansion of macro IMPL_COMPILER_ASSERT
 #define COMPILER_CHECK(pred) IMPL_COMPILER_ASSERT(pred, __LINE__)
                              ^~~~~~~~~~~~~~~~~~~~
/data/cigi/cjw-easybuild/easybuild/build/Clang/9.0.1/GCCcore-8.3.0/llvm-9.0.1.src/projects/compiler-rt/lib/sanitizer_common/sanitizer_platform_limits_posix.h:1437:3: note: in expansion of macro COMPILER_CHECK
   COMPILER_CHECK(sizeof(((__sanitizer_##CLASS *) NULL)->MEMBER) == \
   ^~~~~~~~~~~~~~
/data/cigi/cjw-easybuild/easybuild/build/Clang/9.0.1/GCCcore-8.3.0/llvm-9.0.1.src/projects/compiler-rt/lib/sanitizer_common/sanitizer_platform_limits_posix.cc:1131:1: note: in expansion of macro CHECK_SIZE_AND_OFFSET
 CHECK_SIZE_AND_OFFSET(ipc_perm, mode);
 ^~~~~~~~~~~~~~~~~~~~~
make[2]: *** [projects/compiler-rt/lib/sanitizer_common/CMakeFiles/RTSanitizerCommon.x86_64.dir/build.make:339: projects/compiler-rt/lib/sanitizer_common/CMakeFiles/RTSanitizerCommon.x86_64.dir/sanitizer_platform_limits_posix.cc.o] Error 1
make[2]: Leaving directory '/data/cigi/cjw-easybuild/easybuild/build/Clang/9.0.1/GCCcore-8.3.0/llvm.obj.1'
make[1]: *** [CMakeFiles/Makefile2:10183: projects/compiler-rt/lib/sanitizer_common/CMakeFiles/RTSanitizerCommon.x86_64.dir/all] Error 2
make[1]: *** Waiting for unfinished jobs....

See https://bugs.gentoo.org/708430

[alexandermichels]

@branfosj Thank you! That seems to have worked! I slightly modified the patch from the link into:

--- llvm-9.0.1.src/projects/compiler-rt/lib/sanitizer_common/sanitizer_platform_limits_posix.cc.orig	2020-03-11 20:35:37.099808821 +0100
+++ llvm-9.0.1.src/projects/compiler-rt/lib/sanitizer_common/sanitizer_platform_limits_posix.cc	2020-03-11 20:36:08.279808758 +0100
@@ -1128,7 +1128,7 @@
 CHECK_SIZE_AND_OFFSET(ipc_perm, cgid);
 #if !defined(__aarch64__) || !SANITIZER_LINUX || __GLIBC_PREREQ (2, 21)
 /* On aarch64 glibc 2.20 and earlier provided incorrect mode field.  */
-CHECK_SIZE_AND_OFFSET(ipc_perm, mode);
+//CHECK_SIZE_AND_OFFSET(ipc_perm, mode);
 #endif
 
 CHECK_TYPE_SIZE(shmid_ds);

and it succeeded. I realized after the fact that my Clang easyconfig wasn't the latest version (lacking Perl from this commit: 50948fd), so I'm going to:

1. Check if the issue exists with Perl (latest version of easyconfig)
2. If so, ensure the patch works with Perl added

[alexandermichels]

Verified that the install failed with the latest version of the Easyconfig and verified that the patch works with the latest version of the Easyconfig. Patch pushed as #15007