add missing dependencies for OpenPIV + switch to PythonBundle easyblock and include progressbar2 as extension

easybuild/easyconfigs/b/bokeh/bokeh-1.4.0-intel-2019b-Python-3.7.4.eb

@@ -0,0 +1,39 @@
+easyblock = 'PythonBundle'
+
+name = 'bokeh'
+version = '1.4.0'
+versionsuffix = '-Python-%(pyver)s'
+
+homepage = 'https://github.com/bokeh/bokeh'
+description = "Statistical and novel interactive HTML plots for Python"
+
+toolchain = {'name': 'intel', 'version': '2019b'}
+
+dependencies = [
+    ('Python', '3.7.4'),
+    ('PyYAML', '5.1.2'),
+    ('Pillow', '6.2.1'),
+    ('SciPy-bundle', '2019.10', versionsuffix),
+]
+
+use_pip = True
+
+exts_list = [
+    ('tornado', '6.0.3', {
+        'source_urls': ['https://pypi.python.org/packages/source/t/tornado'],
+        'checksums': ['c845db36ba616912074c5b1ee897f8e0124df269468f25e4fe21fe72f6edd7a9'],
+    }),
+    (name, version, {
+        'source_urls': ['https://pypi.python.org/packages/source/b/bokeh'],
+        'checksums': ['c60d38a41a777b8147ee4134e6142cea8026b5eebf48149e370c44689869dce7'],
+    }),
+]
+
+sanity_check_paths = {
+    'files': ['bin/bokeh'],
+    'dirs': ['lib/python%(pyshortver)s/site-packages'],
+}
+
+sanity_pip_check = True
+
+moduleclass = 'tools'

easybuild/easyconfigs/d/dask/dask-2.8.0-intel-2019b-Python-3.7.4.eb

@@ -0,0 +1,75 @@
+easyblock = 'PythonBundle'
+
+name = 'dask'
+version = '2.8.0'
+versionsuffix = '-Python-%(pyver)s'
+
+homepage = 'https://dask.org/'
+description = """Dask natively scales Python. Dask provides advanced parallelism for analytics, enabling performance
+ at scale for the tools you love."""
+
+toolchain = {'name': 'intel', 'version': '2019b'}
+
+dependencies = [
+    ('Python', '3.7.4'),
+    ('PyYAML', '5.1.2'),
+    ('SciPy-bundle', '2019.10', versionsuffix),
+    ('bokeh', '1.4.0', versionsuffix),
+]
+
+use_pip = True
+sanity_pip_check = True
+
+exts_default_options = {'source_urls': [PYPI_SOURCE]}
+
+exts_list = [
+    ('fsspec', '0.6.0', {
+        'checksums': ['5108f9192b7b2c6a03e69d5084d5fc88c05d4312724a38efce37c9f3a6d360fa'],
+    }),
+    ('toolz', '0.10.0', {
+        'checksums': ['08fdd5ef7c96480ad11c12d472de21acd32359996f69a5259299b540feba4560'],
+    }),
+    ('locket', '0.2.0', {
+        'checksums': ['1fee63c1153db602b50154684f5725564e63a0f6d09366a1cb13dffcec179fb4'],
+    }),
+    ('partd', '1.0.0', {
+        'checksums': ['54fd91bc3b9c38159c790cd16950dbca6b019a2ead4c51dee4f9efc884f8ce0e'],
+    }),
+    ('HeapDict', '1.0.1', {
+        'checksums': ['8495f57b3e03d8e46d5f1b2cc62ca881aca392fd5cc048dc0aa2e1a6d23ecdb6'],
+    }),
+    ('zict', '1.0.0', {
+        'checksums': ['e34dd25ea97def518fb4c77f2c27078f3a7d6c965b0a3ac8fe5bdb0a8011a310'],
+    }),
+    ('tblib', '1.5.0', {
+        'checksums': ['1735ff8fd6217446384b5afabead3b142cf1a52d242cfe6cab4240029d6d131a'],
+    }),
+    ('msgpack', '0.6.2', {
+        'checksums': ['ea3c2f859346fcd55fc46e96885301d9c2f7a36d453f5d8f2967840efa1e1830'],
+    }),
+    ('cloudpickle', '1.2.2', {
+        'checksums': ['922401d7140e133253ff5fab4faa4a1166416066453a783b00b507dca93f8859'],
+    }),
+    (name, version, {
+        'checksums': ['000f1d8cea21e73d4691718d9224903e9ba37fbbe756c8e7d11d4067ef9e0609'],
+    }),
+    ('distributed', version, {
+        'checksums': ['37f8a89bb499b7858a2396e3fdd2e5997dece543725d3791ce239d960a647710'],
+    }),
+    ('dask-mpi', '2.0.0', {
+        'checksums': ['774cd2d69e5f7154e1fa133c22498062edd31507ffa2ea19f4ab4d8975c27bc3'],
+    }),
+    ('docrep', '0.2.7', {
+        'checksums': ['c48939ae14d79172839a5bbaf5a570add47f6cc44d2c18f6b1fac8f1c38dec4d'],
+    }),
+    ('dask-jobqueue', '0.7.0', {
+        'checksums': ['660cd4cd052ada872fd6413f224a2d9221026dd55a8a29a9a7d52b262bec67e7'],
+    }),
+]
+
+sanity_check_paths = {
+    'files': ['bin/dask-%s' % x for x in ['mpi', 'remote', 'scheduler', 'ssh', 'submit', 'worker']],
+    'dirs': ['lib/python%(pyshortver)s/site-packages'],
+}
+
+moduleclass = 'data'

easybuild/easyconfigs/i/imageio/imageio-2.9.0-intel-2019b-Python-3.7.4.eb

@@ -0,0 +1,33 @@
+easyblock = 'PythonPackage'
+
+name = 'imageio'
+version = '2.9.0'
+versionsuffix = '-Python-%(pyver)s'
+
+homepage = 'https://imageio.github.io'
+description = """Imageio is a Python library that provides an easy interface to read and write a wide range of
+ image data, including animated images, video, volumetric data, and scientific formats."""
+
+toolchain = {'name': 'intel', 'version': '2019b'}
+
+source_urls = [PYPI_SOURCE]
+sources = [SOURCE_TAR_GZ]
+checksums = ['52ddbaeca2dccf53ba2d6dec5676ca7bc3b2403ef8b37f7da78b7654bb3e10f0']
+
+dependencies = [
+    ('Python', '3.7.4'),
+    ('Pillow', '6.2.1'),
+    ('SciPy-bundle', '2019.10', versionsuffix),
+]
+
+download_dep_fail = True
+use_pip = True
+
+sanity_check_paths = {
+    'files': [],
+    'dirs': ['lib/python%(pyshortver)s/site-packages/'],
+}
+
+sanity_pip_check = True
+
+moduleclass = 'vis'

easybuild/easyconfigs/o/OpenPIV/OpenPIV-0.21.8-intel-2019b-Python-3.7.4.eb

@@ -1,4 +1,4 @@
-easyblock = 'PythonPackage'
+easyblock = 'PythonBundle'
 
 name = 'OpenPIV'
 version = '0.21.8'
@@ -9,17 +9,31 @@ description = "OpenPIV is an open source Particle Image Velocimetry analysis sof
 
 toolchain = {'name': 'intel', 'version': '2019b'}
 
-source_urls = [PYPI_SOURCE]
-sources = [SOURCE_TAR_GZ]
-checksums = ['1cdb48fa7928555e1f2fe5b444d356fe0cacf1405a445dbf004489d31c9e34fc']
-
 dependencies = [
     ('Python', '3.7.4'),
     ('SciPy-bundle', '2019.10', versionsuffix),
+    ('imageio', '2.9.0', versionsuffix),
+    ('matplotlib', '3.1.1', versionsuffix),
+    ('scikit-image', '0.16.2', versionsuffix),
 ]
 
-download_dep_fail = True
 use_pip = True
+
+exts_default_options = {'source_urls': [PYPI_SOURCE]}
+
+exts_list = [
+    ('python-utils', '2.4.0', {
+        'checksums': ['f21fc09ff58ea5ebd1fd2e8ef7f63e39d456336900f26bdc9334a03a3f7d8089'],
+    }),
+    ('progressbar2', '3.51.4', {
+        'checksums': ['13f228cf357f94cdef933c91c1e771e52e1b1931dbae48267be8fcdc2ae2ce36'],
+        'modulename': 'progressbar',
+    }),
+    (name, version, {
+        'checksums': ['1cdb48fa7928555e1f2fe5b444d356fe0cacf1405a445dbf004489d31c9e34fc'],
+    }),
+]
+
 sanity_pip_check = True
 
 moduleclass = 'vis'

easybuild/easyconfigs/s/scikit-image/scikit-image-0.16.2-intel-2019b-Python-3.7.4.eb

@@ -0,0 +1,48 @@
+easyblock = 'PythonBundle'
+
+name = 'scikit-image'
+version = '0.16.2'
+versionsuffix = '-Python-%(pyver)s'
+
+homepage = 'https://scikit-image.org/'
+description = "scikit-image is a collection of algorithms for image processing."
+
+toolchain = {'name': 'intel', 'version': '2019b'}
+
+dependencies = [
+    ('Python', '3.7.4'),
+    ('matplotlib', '3.1.1', versionsuffix),
+    ('Pillow', '6.2.1'),
+    ('dask', '2.8.0', versionsuffix),
+]
+
+use_pip = True
+
+exts_default_options = {'source_urls': [PYPI_SOURCE]}
+
+exts_list = [
+    ('networkx', '2.4', {
+        'checksums': ['f8f4ff0b6f96e4f9b16af6b84622597b5334bf9cae8cf9b2e42e7985d5c95c64'],
+    }),
+    ('PyWavelets', '1.1.1', {
+        'modulename': 'pywt',
+        'checksums': ['1a64b40f6acb4ffbaccce0545d7fc641744f95351f62e4c6aaa40549326008c9'],
+    }),
+    ('imageio', '2.6.1', {
+        'checksums': ['f44eb231b9df485874f2ffd22dfd0c3c711e7de076516b9374edea5c65bc67ae'],
+    }),
+    ('imread', '0.7.1', {
+        'checksums': ['c343b546ab54acdb50dbe69d6793d64ead3ba6d585022f5a7ad4687b7f3db79b'],
+    }),
+    (name, version, {
+        'modulename': 'skimage',
+        'checksums': ['dd7fbd32da74d4e9967dc15845f731f16e7966cee61f5dc0e12e2abb1305068c'],
+        # avoid building with OpenMP support, since that triggers a nasty internal compiler error with icpc 19.0.5.281:
+        # Segmentation violation signal raised
+        'preinstallopts': "sed -i 's/-fopenmp//g' setup.py && "
+    }),
+]
+
+sanity_pip_check = True
+
+moduleclass = 'vis'