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use correct Matlab Runtime Compiler (v8.4) for FreeSurfer v7.1.1 #13375

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Merged
boegel merged 3 commits into from
Aug 23, 2022
Merged

use correct Matlab Runtime Compiler (v8.4) for FreeSurfer v7.1.1 #13375

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f742952
Update Matlab Runtime Compiler to 8.4 for FreeSurfer 7
Jul 7, 2021
da5639f
Clarify that MCR and FreeSurfer versions are linked
Jul 13, 2021
30f019e
Merge branch 'develop' of https://github.com/easybuilders/easybuild-e…
boegel Aug 23, 2022
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14 changes: 9 additions & 5 deletions easybuild/easyconfigs/f/FreeSurfer/FreeSurfer-7.1.1-centos6_x86_64.eb
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Original file line number Diff line number Diff line change
Expand Up @@ -12,17 +12,21 @@ source_urls = [
'https://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/%(version)s/',
'https://surfer.nmr.mgh.harvard.edu/fswiki/MatlabRuntime?action=AttachFile&do=get&target='
]

# The FreeSurfer and MCR versions are linked. Fresurfer > v7 uses MCR 8.4 (R2014b).
# Please check the documentation for the latest linked versions:
# https://surfer.nmr.mgh.harvard.edu/fswiki/MatlabRuntime
sources = [
'%(namelower)s-linux%(versionsuffix)s-%(version)s.tar.gz',
'runtime2012bLinux.tar.gz'
'runtime2014bLinux.tar.gz'
]

checksums = [
# freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.1.tar.gz
'4026a5d5df41fd5a82a1b8c43a011cf0da4a0055737822e6b011fdb1370284a3',
'3ef4231d566fca45436eda03ae3bb93ffa7af0974a48112348c0d76c62b5fa64', # runtime2012bLinux.tar.gz
'4026a5d5df41fd5a82a1b8c43a011cf0da4a0055737822e6b011fdb1370284a3', # freesurfer-linux-centos6_x86_64-7.1.1.tar.gz
'944852af2b5a493f5261fd619af828c6e4afc0c90e6f7e709acfb616c5b51648', # runtime2014bLinux.tar.gz
]

postinstallcmds = ['cp -a %(builddir)s/MCRv80/ %(installdir)s']
postinstallcmds = ['cp -a %(builddir)s/MCRv84/ %(installdir)s']

license_text = """[email protected]
00000
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14 changes: 9 additions & 5 deletions easybuild/easyconfigs/f/FreeSurfer/FreeSurfer-7.1.1-centos7_x86_64.eb
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -12,17 +12,21 @@ source_urls = [
'https://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/%(version)s/',
'https://surfer.nmr.mgh.harvard.edu/fswiki/MatlabRuntime?action=AttachFile&do=get&target='
]

# The FreeSurfer and MCR versions are linked. Fresurfer > v7 uses MCR 8.4 (R2014b).
# Please check the documentation for the latest linked versions:
# https://surfer.nmr.mgh.harvard.edu/fswiki/MatlabRuntime
sources = [
'%(namelower)s-linux%(versionsuffix)s-%(version)s.tar.gz',
'runtime2012bLinux.tar.gz'
'runtime2014bLinux.tar.gz'
]

checksums = [
# freesurfer-Linux-centos7_x86_64-stable-pub-v7.1.1.tar.gz
'6098b166fee8644f44f9ec88f3ffe88d05f2bc033cca60443e99e3e56f2e166b',
'3ef4231d566fca45436eda03ae3bb93ffa7af0974a48112348c0d76c62b5fa64', # runtime2012bLinux.tar.gz
'6098b166fee8644f44f9ec88f3ffe88d05f2bc033cca60443e99e3e56f2e166b', # freesurfer-linux-centos7_x86_64-7.1.1.tar.gz
'944852af2b5a493f5261fd619af828c6e4afc0c90e6f7e709acfb616c5b51648', # runtime2014bLinux.tar.gz
]

postinstallcmds = ['cp -a %(builddir)s/MCRv80/ %(installdir)s']
postinstallcmds = ['cp -a %(builddir)s/MCRv84/ %(installdir)s']

license_text = """[email protected]
00000
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12 changes: 7 additions & 5 deletions easybuild/easyconfigs/f/FreeSurfer/FreeSurfer-7.1.1-centos8_x86_64.eb
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -14,15 +14,17 @@ source_urls = [
]
sources = [
'%(namelower)s-linux%(versionsuffix)s-%(version)s.tar.gz',
'runtime2012bLinux.tar.gz'
'runtime2014bLinux.tar.gz'
]
checksums = [
# freesurfer-Linux-centoss86_x86_64-stable-pub-v7.1.1.tar.gz
'6098b166fee8644f44f9ec88f3ffe88d05f2bc033cca60443e99e3e56f2e166b',
'3ef4231d566fca45436eda03ae3bb93ffa7af0974a48112348c0d76c62b5fa64', # runtime2012bLinux.tar.gz
'6098b166fee8644f44f9ec88f3ffe88d05f2bc033cca60443e99e3e56f2e166b', # freesurfer-linux-centos8_x86_64-7.1.1.tar.gz
'944852af2b5a493f5261fd619af828c6e4afc0c90e6f7e709acfb616c5b51648', # runtime2014bLinux.tar.gz
]

postinstallcmds = ['cp -a %(builddir)s/MCRv80/ %(installdir)s']
# The FreeSurfer and MCR versions are linked. Fresurfer > v7 uses MCR 8.4 (R2014b).
# Please check the documentation for the latest linked versions:
# https://surfer.nmr.mgh.harvard.edu/fswiki/MatlabRuntime
postinstallcmds = ['cp -a %(builddir)s/MCRv84/ %(installdir)s']

license_text = """[email protected]
00000
Expand Down