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(created using eb --new-pr)

@akesandgren akesandgren linked an issue Jan 18, 2022 that may be closed by this pull request
@akesandgren akesandgren added this to the 4.x milestone Jan 18, 2022
@akesandgren akesandgren changed the title do not use external libgcrypt or python for libxslt with recent toolchains do not use external libgcrypt or python for libxslt with recent toolchains WIP Jan 18, 2022
@akesandgren akesandgren modified the milestones: 4.x, 4.5.2 Jan 18, 2022
@akesandgren akesandgren changed the title do not use external libgcrypt or python for libxslt with recent toolchains WIP do not use external libgcrypt or python for libxslt with recent toolchains Jan 18, 2022
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@boegelbot Please test @ generoso

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@akesandgren: Request for testing this PR well received on login1

PR test command 'EB_PR=14756 EB_ARGS= /opt/software/slurm/bin/sbatch --job-name test_PR_14756 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

  • exit code: 0
  • output:
Submitted batch job 7889

Test results coming soon (I hope)...

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- notification for comment with ID 1015339654 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

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Test report by @boegelbot
SUCCESS
Build succeeded for 5 out of 5 (5 easyconfigs in total)
cns1 - Linux rocky linux 8.4, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/1a738877df7526f14b983b81f344d876 for a full test report.

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akesandgren commented Jan 18, 2022

Test report by @akesandgren
SUCCESS
Build succeeded for 5 out of 5 (5 easyconfigs in total)
b-an02.hpc2n.umu.se - Linux Ubuntu 20.04, x86_64, Intel(R) Xeon(R) CPU E5-2690 v4 @ 2.60GHz, Python 3.8.10
See https://gist.github.com/21592d036f2944ab15339b2a5add6770 for a full test report.

Builds done in container with libgcrypt-dev installed. Examination shows no trace of libexslt.a needing libgcrypt. Without the fix it does need it.

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Test report by @verdurin
SUCCESS
Build succeeded for 3 out of 3 (5 easyconfigs in total)
centos7.lan - Linux centos linux 7.9.2009, x86_64, Intel Core Processor (Skylake, IBRS), Python 3.6.8
See https://gist.github.com/797900a9db10abfc816829bbaa0d272f for a full test report.

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Looks fine.

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Going in, thanks @akesandgren!

@verdurin verdurin merged commit e7cbe97 into easybuilders:develop Jan 18, 2022
@akesandgren akesandgren deleted the 20220118122436_new_pr_libxslt1134 branch January 18, 2022 12:44
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bcl2fastq link error with libxslt-1.1.34

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