{bio,tools}[foss/2021b] R-bundle-Bioconductor v3.15, arrow-R v6.0.0.2

[branfosj]

(created using eb --new-pr)

notes:

• the existing patch for mzR does not apply and the developers suggest it may not be needed.
• GenABEL fails to build and has not been updated in 4 years. So I've removed it and GenABEL.data.
• CAGEr (and dep MultiAssayExperiment) are added for my site.

[boegel]

@boegelbot please test @ generoso

[boegelbot]

@boegel: Request for testing this PR well received on login1

PR test command 'EB_PR=15444 EB_ARGS= /opt/software/slurm/bin/sbatch --job-name test_PR_15444 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

• exit code: 0
• output:

Submitted batch job 8503

Test results coming soon (I hope)...

Details

- notification for comment with ID 1119003619 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

[branfosj]

Test report by @branfosj
SUCCESS
Build succeeded for 2 out of 2 (2 easyconfigs in total)
bear-pg0211u03a.bear.cluster - Linux RHEL 8.5, x86_64, Intel(R) Xeon(R) Gold 6248 CPU @ 2.50GHz (cascadelake), Python 3.6.8
See https://gist.github.com/869655994822b19d4c2a8e658e1b540a for a full test report.

[boegelbot]

Test report by @boegelbot
SUCCESS
Build succeeded for 2 out of 2 (2 easyconfigs in total)
cns1 - Linux Rocky Linux 8.5, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/860ecf532602e7119e62ab29658de4cd for a full test report.

[verdurin]

Test report by @verdurin
FAILED
Build succeeded for 1 out of 2 (2 easyconfigs in total)
centos7.lan - Linux CentOS Linux 7.9.2009, x86_64, Intel Core Processor (Skylake, IBRS), Python 3.6.8
See https://gist.github.com/a9bb44b7c7e6a78f373b45eb06012cc0 for a full test report.

[verdurin]

Test report by @verdurin
SUCCESS
Build succeeded for 2 out of 2 (2 easyconfigs in total)
easybuild-c7.novalocal - Linux CentOS Linux 7.9.2009, x86_64, Intel Xeon Processor (Skylake, IBRS), Python 3.6.8
See https://gist.github.com/fd6f57834691a8341f909b9910bdd468 for a full test report.

[verdurin]

Test report by @verdurin
SUCCESS
Build succeeded for 2 out of 2 (2 easyconfigs in total)
centos7.lan - Linux CentOS Linux 7.9.2009, x86_64, Intel Core Processor (Skylake, IBRS), Python 3.6.8
See https://gist.github.com/707be73d4881d6cea8eb2a26189b1c3c for a full test report.

[verdurin]

@branfosj would you like more test builds after your changes, minor as they are, or happy for me to merge as is?

[branfosj]

@branfosj would you like more test builds after your changes, minor as they are, or happy for me to merge as is?

My changes, post test builds, were all to sort out the required exception for the test suite and made no change to the easyconfig. So I do not think any more test builds are required for this.

[boegel]

Test report by @boegel
SUCCESS
Build succeeded for 2 out of 2 (2 easyconfigs in total)
node2619.swalot.os - Linux CentOS Linux 7.9.2009, x86_64, Intel(R) Xeon(R) CPU E5-2660 v3 @ 2.60GHz (haswell), Python 3.6.8
See https://gist.github.com/a3ccc214ec59d1a535f6a09dcd8566d9 for a full test report.

[boegel]

lgtm

[boegel]

Going in, thanks @branfosj!