{tools}[GCCcore/10.3.0] jupyterlab-lmod v1.0.2, jupyterlmod v3.0.0, jupyter-server v1.13.4 + add jupyter-server dependency to JupyterLab

[lexming]

(created using eb --new-pr)

Depends on:

• build nodejs with OpenSSL and ICU provided as proper dependencies #16529

Soft dependency for consistency:

• also define $JUPYTER_CONFIG_PATH in IPython and JupyterLab easyconfigs #16556

[lexming]

@boegelbot: please test @ generoso

[boegelbot]

@lexming: Request for testing this PR well received on login1

PR test command 'EB_PR=16562 EB_ARGS= EB_CONTAINER= /opt/software/slurm/bin/sbatch --job-name test_PR_16562 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

• exit code: 0
• output:

Submitted batch job 9446

Test results coming soon (I hope)...

Details

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Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

[boegelbot]

Test report by @boegelbot
SUCCESS
Build succeeded for 4 out of 4 (4 easyconfigs in total)
cns1 - Linux Rocky Linux 8.5, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/3033decf729037fe01561fa5bbc9649f for a full test report.

[boegel]

@lexming PR title suggests changes to IPython, but only JupyterLab easyconfig is touched?

[lexming]

@boegel the Lmod extensions have their own easyconfigs:

• jupyterlmod-3.0.0-GCCcore-10.3.0.eb is for IPython
• jupyterlab-lmod-1.0.2-GCCcore-10.3.0.eb is for JupyterLab

[lexming]

@boegel after the sync with develop, the only extra thing that remains in JupyterLab is the split of jupyter-server into its own easyconfig. This is harmless and I did it to keep parity with newer toolchains, we already have the same arrangement in GCCcore/11.3.0. If you prefer a different PR for that change let me know.

[boegel]

@lexming Wasn't it your intention of adding jupyterlmod as a dependency to IPython?

[lexming]

@boegel jupyterlmod depends on IPython because it's an extension of IPython, it works without JupyterLab.

[boegel]

Test report by @boegel
FAILED
Build succeeded for 3 out of 4 (4 easyconfigs in total)
node3100.skitty.os - Linux RHEL 8.6, x86_64, Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz (skylake_avx512), Python 3.6.8
See https://gist.github.com/6c78da6fe71d7e0656539be1909176be for a full test report.

edit: @lexming

RuntimeError: npm dependencies failed to install

error An unexpected error occurred: "EACCES: permission denied, open '/arcanine/scratch/gent/vo/000/gvo00002/vsc40023/easybuild_tests/RHEL8/skylake-ib/software/jupyterlab-lmod/1.0.2-GCCcore-10.3.0/share/jupyter/lab/staging/yarn.lock'".

[lexming]

@boegel that's a weird issue, the permission error happens inside the installation directory of jupyterlab-lmod during its postinstall step. So it should already exist and be writable. Did something else fail before that point?

[boegel]

@boegel that's a weird issue, the permission error happens inside the installation directory of jupyterlab-lmod during its postinstall step. So it should already exist and be writable. Did something else fail before that point?

@lexming That setup is configured with --read-only-installdir, that's likely related...

[lexming]

Superseded by #17888