{tools}[GCCcore/11.3.0] jupyterlmod v3.0.0, jupyterlab-lmod v1.0.2 w/ Python 3.10.4 #16563

lexming · 2022-11-07T10:12:26Z

(created using eb --new-pr)

Depends on:

{tools}[GCCcore/11.3.0] JupyterLab v3.5.0, jupyter-server v1.21.0 w/ Python 3.10.4 #16561
build nodejs with OpenSSL and ICU provided as proper dependencies #16529

…mod-1.0.2-GCCcore-11.3.0.eb

…asyconfigs into 20221107111202_new_pr_jupyterlmod300

lexming · 2022-11-25T11:57:40Z

@boegelbot: please test @ generoso

boegelbot · 2022-11-25T12:00:13Z

@lexming: Request for testing this PR well received on login1

PR test command 'EB_PR=16563 EB_ARGS= EB_CONTAINER= /opt/software/slurm/bin/sbatch --job-name test_PR_16563 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

exit code: 0
output:

Submitted batch job 9671

Test results coming soon (I hope)...

Details

- notification for comment with ID 1327387145 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2022-11-25T12:04:12Z

Test report by @boegelbot
SUCCESS
Build succeeded for 2 out of 2 (2 easyconfigs in total)
cns1 - Linux Rocky Linux 8.5, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/42db568f30a3df95e6e53726bcfc31fc for a full test report.

casparvl · 2023-02-10T16:11:11Z

jupyterlab-lmod doesn't build for me, and I don't get any proper logs to find out why...

== 2023-02-10 17:10:29,688 build_log.py:171 ERROR EasyBuild crashed with an error (at easybuild/base/exceptions.py:126 in __init__): cmd " mkdir -p /home/casparl/.local/easybuild/RHEL8/2022/software/jupyterlab-lmod/1.0.2-GCCcore-11.3.0/share/jupyter/lab && JUPYTERLAB_DIR=/home/casparl/.local/easybuild/RHEL8/2022/software/jupyterlab-lmod/1.0.2-GCCcore-11.3.0/share/jupyter/lab jupyter labextension install jupyterlab-lmod-1.0.2.tgz " exited with exit code 1 and output:
Building jupyterlab assets (production, minimized)
An error occurred.
RuntimeError: JupyterLab failed to build
See the log file for details:  /scratch-shared/casparl/eb-kp55xg0r/jupyterlab-debug-tt0xbht5.log

But the /scratch-shared/casparl/eb-kp55xg0r/jupyterlab-debug-tt0xbht5.log logfile is empty...

casparvl · 2023-02-10T16:36:52Z

I managed to get a more extensive error output by dumping the environment script (--dump-env-script), going into the builddir, and running

JUPYTERLAB_DIR=/home/casparl/.local/easybuild/RHEL8/2022/software/jupyterlab-lmod/1.0.2-GCCcore-11.3.0/share/jupyter/lab jupyter labextension install --debug jupyterlab-lmod-1.0.2.tgz

manually. The --debug flag prints debugging output:

Yarn configuration loaded.
Building jupyterlab assets (production, minimized)
> node /home/casparl/.local/easybuild/RHEL8/2022/software/JupyterLab/3.5.0-GCCcore-11.3.0/lib/python3.10/site-packages/jupyterlab/staging/yarn.js install --non-interactive
/yarn install v1.21.1
[1/5] Validating package.json...
[2/5] Resolving packages...
success Already up-to-date.
Done in 0.42s.

> node /home/casparl/.local/easybuild/RHEL8/2022/software/JupyterLab/3.5.0-GCCcore-11.3.0/lib/python3.10/site-packages/jupyterlab/staging/yarn.js yarn-deduplicate -s fewer --fail
|yarn run v1.21.1
$ /gpfs/home4/casparl/.local/easybuild/RHEL8/2022/software/jupyterlab-lmod/1.0.2-GCCcore-11.3.0/share/jupyter/lab/staging/node_modules/.bin/yarn-deduplicate -s fewer --fail
Done in 0.27s.

> node /home/casparl/.local/easybuild/RHEL8/2022/software/JupyterLab/3.5.0-GCCcore-11.3.0/lib/python3.10/site-packages/jupyterlab/staging/yarn.js run build:prod:minimize
\yarn run v1.21.1
$ webpack --config webpack.prod.minimize.config.js
[webpack-cli] SyntaxError: Invalid regular expression: /(\p{Uppercase_Letter}+|\p{Lowercase_Letter}|\d)(\p{Uppercase_Letter}+)/: Invalid property name
    at pathToArgumentName (/gpfs/home4/casparl/.local/easybuild/RHEL8/2022/software/jupyterlab-lmod/1.0.2-GCCcore-11.3.0/share/jupyter/lab/staging/node_modules/webpack/lib/cli.js:66:4)
    at addFlag (/gpfs/home4/casparl/.local/easybuild/RHEL8/2022/software/jupyterlab-lmod/1.0.2-GCCcore-11.3.0/share/jupyter/lab/staging/node_modules/webpack/lib/cli.js:170:16)
    at traverse (/gpfs/home4/casparl/.local/easybuild/RHEL8/2022/software/jupyterlab-lmod/1.0.2-GCCcore-11.3.0/share/jupyter/lab/staging/node_modules/webpack/lib/cli.js:243:21)
    at traverse (/gpfs/home4/casparl/.local/easybuild/RHEL8/2022/software/jupyterlab-lmod/1.0.2-GCCcore-11.3.0/share/jupyter/lab/staging/node_modules/webpack/lib/cli.js:299:23)
    at traverse (/gpfs/home4/casparl/.local/easybuild/RHEL8/2022/software/jupyterlab-lmod/1.0.2-GCCcore-11.3.0/share/jupyter/lab/staging/node_modules/webpack/lib/cli.js:248:24)
    at Object.getArguments (/gpfs/home4/casparl/.local/easybuild/RHEL8/2022/software/jupyterlab-lmod/1.0.2-GCCcore-11.3.0/share/jupyter/lab/staging/node_modules/webpack/lib/cli.js:308:2)
    at WebpackCLI.getBuiltInOptions (/gpfs/home4/casparl/.local/easybuild/RHEL8/2022/software/jupyterlab-lmod/1.0.2-GCCcore-11.3.0/share/jupyter/lab/staging/node_modules/webpack-cli/lib/webpack-cli.j
s:681:47)
    at loadCommandByName (/gpfs/home4/casparl/.local/easybuild/RHEL8/2022/software/jupyterlab-lmod/1.0.2-GCCcore-11.3.0/share/jupyter/lab/staging/node_modules/webpack-cli/lib/webpack-cli.js:838:38)
    at Command.<anonymous> (/gpfs/home4/casparl/.local/easybuild/RHEL8/2022/software/jupyterlab-lmod/1.0.2-GCCcore-11.3.0/share/jupyter/lab/staging/node_modules/webpack-cli/lib/webpack-cli.js:1462:23
)
    at Command.listener [as _actionHandler] (/gpfs/home4/casparl/.local/easybuild/RHEL8/2022/software/jupyterlab-lmod/1.0.2-GCCcore-11.3.0/share/jupyter/lab/staging/node_modules/webpack-cli/node_modu
les/commander/index.js:922:31)
error Command failed with exit code 2.
info Visit https://yarnpkg.com/en/docs/cli/run for documentation about this command.

JupyterLab failed to build
Traceback (most recent call last):

  File "/home/casparl/.local/easybuild/RHEL8/2022/software/JupyterLab/3.5.0-GCCcore-11.3.0/lib/python3.10/site-packages/jupyterlab/debuglog.py", line 47, in debug_logging
    yield

  File "/home/casparl/.local/easybuild/RHEL8/2022/software/JupyterLab/3.5.0-GCCcore-11.3.0/lib/python3.10/site-packages/jupyterlab/labextensions.py", line 153, in start
    build(

  File "/home/casparl/.local/easybuild/RHEL8/2022/software/JupyterLab/3.5.0-GCCcore-11.3.0/lib/python3.10/site-packages/jupyterlab/commands.py", line 506, in build
    return handler.build(

  File "/home/casparl/.local/easybuild/RHEL8/2022/software/JupyterLab/3.5.0-GCCcore-11.3.0/lib/python3.10/site-packages/jupyterlab/commands.py", line 722, in build
    raise RuntimeError(msg)

RuntimeError: JupyterLab failed to build

An error occurred.

No clue yet what's wrong. I might try reinstalling nodejs, as I think you may have used one of your previous PR's for that - and I'm not sure if we have the same installation for that now (we might have had our own EasyConfig). It doesn't immediately look like a nodejs problem though...

casparvl · 2023-02-10T17:20:24Z

Ok, reinstalling nodejs helped. Not sure what was wrong in our original installation, but I don't care enough to find out. Anyway, I'll upload a test report for this PR :)

casparvl · 2023-02-10T17:22:23Z

Test report by @casparvl
SUCCESS
Build succeeded for 2 out of 2 (2 easyconfigs in total)
int4 - Linux Rocky Linux 8.7, x86_64, AMD EPYC 7F72 24-Core Processor, Python 3.6.8
See https://gist.github.com/6b575c97253da40359d5b97942797341 for a full test report.

casparvl

Looks good to me!

casparvl · 2023-02-10T17:26:39Z

@boegelbot please test @ jsc-zen2

boegelbot · 2023-02-10T17:27:08Z

@casparvl: Request for testing this PR well received on jsczen2l1.int.jsc-zen2.easybuild-test.cluster

PR test command 'EB_PR=16563 EB_ARGS= /opt/software/slurm/bin/sbatch --mem-per-cpu=4000M --job-name test_PR_16563 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen2.sh' executed!

exit code: 0
output:

Submitted batch job 2178

Test results coming soon (I hope)...

Details

- notification for comment with ID 1426118916 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2023-02-10T17:30:44Z

Test report by @boegelbot
SUCCESS
Build succeeded for 2 out of 2 (2 easyconfigs in total)
jsczen2c1.int.jsc-zen2.easybuild-test.cluster - Linux Rocky Linux 8.5, x86_64, AMD EPYC 7742 64-Core Processor (zen2), Python 3.6.8
See https://gist.github.com/00541c8a2c0fd919ed3bf284cca2b7df for a full test report.

casparvl · 2023-02-10T17:32:30Z

Going in, thanks @lexming!

lexming · 2023-02-10T23:47:40Z

@casparvl your initial error is related to issue jupyterlab/jupyterlab#10487, which we fixed in nodejs #16529 . That's why a rebuild of nodejs solved it.

adding easyconfigs: jupyterlmod-3.0.0-GCCcore-11.3.0.eb, jupyterlab-l…

43e24ef

…mod-1.0.2-GCCcore-11.3.0.eb

lexming added the new label Nov 7, 2022

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{tools}[GCCcore/11.3.0] JupyterHub v3.0.0, configurable-http-proxy v4.5.3 w/ Python 3.10.4 #16424

Merged

1 task

Merge branch 'develop' of https://github.com/easybuilders/easybuild-e…

1cc21a5

…asyconfigs into 20221107111202_new_pr_jupyterlmod300

casparvl approved these changes Feb 10, 2023

View reviewed changes

casparvl added this to the next release (4.7.1?) milestone Feb 10, 2023

casparvl merged commit 14cfd8e into easybuilders:develop Feb 10, 2023

lexming deleted the 20221107111202_new_pr_jupyterlmod300 branch February 10, 2023 23:43

{tools}[GCCcore/11.3.0] jupyterlmod v3.0.0, jupyterlab-lmod v1.0.2 w/ Python 3.10.4 #16563

{tools}[GCCcore/11.3.0] jupyterlmod v3.0.0, jupyterlab-lmod v1.0.2 w/ Python 3.10.4 #16563

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