{bio}[foss/2021a] nf-core-mag v20221110

easybuild/easyconfigs/n/nf-core-mag/nf-core-mag-20221110-foss-2021a.eb

@@ -0,0 +1,56 @@
+##
+# This is a contribution from SIB Swiss Institute of Bioinformatics
+# Homepage:     https://www.sib.swiss/research-infrastructure/competence-centers/vital-it
+#
+# Authors::     Sebastien Moretti <[email protected]>
+#
+##
+
+easyblock = 'Bundle'
+
+name = 'nf-core-mag'
+version = '20221110'
+
+homepage = 'https://nf-co.re/mag'
+description = """The Nextflow pipeline 'mag' ported to EasyBuild/EESSI."""
+
+toolchain = {'name': 'foss', 'version': '2021a'}
+
+dependencies = [
+    ('Nextflow',       '22.10.1', '', SYSTEM),
+    ('AdapterRemoval', '2.3.2'),
+    ('BCFtools',       '1.12'),
+    ('Bowtie2',        '2.4.4'),
+    ('BUSCO',          '5.4.2'),
+    ('CAT-BAT',        '5.2.3'),
+    ('Centrifuge',     '1.0.4'),
+    ('DAS_Tool',       '1.1.3', '-R-4.1.0'),
+    ('fastp',          '0.23.2'),
+    ('FastQC',         '0.11.9', '-Java-11', SYSTEM),
+    ('Filtlong',       '0.2.1'),
+    ('freebayes',      '1.3.6', '-R-4.1.0'),
+    ('GTDB-Tk',        '2.0.0'),
+    ('Kraken2',        '2.1.2'),
+    ('KronaTools',     '2.8'),
+    ('MaxBin',         '2.2.7'),
+    ('MEGAHIT',        '1.2.9'),
+    ('MetaBAT',        '2.15'),
+    ('MultiQC',        '1.11'),
+    ('NanoLyse',       '1.2.1'),
+    ('NanoPlot',       '1.33.0'),
+    ('Porechop',       '0.2.4'),
+    ('prodigal',       '2.6.3'),
+    ('prokka',         '1.14.5'),
+    ('PyDamage',       '0.70'),
+    ('QUAST',          '5.0.2'),
+    ('SPAdes',         '3.13.0'),
+]
+
+postinstallcmds = ["echo 'Bundle for the Nextflow pipeline https://nf-co.re/mag' > %(installdir)s/README"]
+
+sanity_check_paths = {
+    'files': ['README'],
+    'dirs': [],
+}
+
+moduleclass = 'bio'