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@lexming lexming commented Mar 31, 2023

(created using eb --new-pr)

Some scripts in MAKER rely on hardcoded paths to the lib folder in the installation directory. Add preinstallopts to fix those paths to the proper location of the libraries.

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lexming commented Mar 31, 2023

@boegelbot: please test @ generoso

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@lexming: Request for testing this PR well received on login1

PR test command 'EB_PR=17629 EB_ARGS= EB_CONTAINER= /opt/software/slurm/bin/sbatch --job-name test_PR_17629 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

  • exit code: 0
  • output:
Submitted batch job 10567

Test results coming soon (I hope)...

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- notification for comment with ID 1491539686 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

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Test report by @boegelbot
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
cns1 - Linux Rocky Linux 8.5, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/boegelbot/60f211a746e11abacf7196d4dc02c21e for a full test report.

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lexming commented Mar 31, 2023

@boegelbot please test @ jsc-zen2

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@lexming: Request for testing this PR well received on jsczen2l1.int.jsc-zen2.easybuild-test.cluster

PR test command 'EB_PR=17629 EB_ARGS= /opt/software/slurm/bin/sbatch --mem-per-cpu=4000M --job-name test_PR_17629 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen2.sh' executed!

  • exit code: 0
  • output:
Submitted batch job 2429

Test results coming soon (I hope)...

Details

- notification for comment with ID 1491553697 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

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Test report by @boegelbot
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
jsczen2c1.int.jsc-zen2.easybuild-test.cluster - Linux Rocky Linux 8.5, x86_64, AMD EPYC 7742 64-Core Processor (zen2), Python 3.6.8
See https://gist.github.com/boegelbot/64133e2be83b16acc47f91caa98e461b for a full test report.

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Test report by @branfosj
FAILED
Build succeeded for 8 out of 10 (1 easyconfigs in total)
bear-pg0105u03a.bear.cluster - Linux RHEL 8.6, x86_64, Intel(R) Xeon(R) Platinum 8360Y CPU @ 2.40GHz (icelake), Python 3.6.8
See https://gist.github.com/branfosj/13842f46d7dc5d083ef3c5d7b5e9077d for a full test report.

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lexming commented Mar 31, 2023

@branfosj GeneMark is licensed software, needs a manual download

@lexming lexming mentioned this pull request Mar 31, 2023
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Test report by @branfosj
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
bear-pg0105u03a.bear.cluster - Linux RHEL 8.6, x86_64, Intel(R) Xeon(R) Platinum 8360Y CPU @ 2.40GHz (icelake), Python 3.6.8
See https://gist.github.com/branfosj/d69961c6bd1d7e7a64a24df2e7f23e53 for a full test report.

@branfosj branfosj added this to the next release (4.7.2?) milestone Mar 31, 2023
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Going in, thanks @lexming!

@branfosj branfosj merged commit 56285dc into easybuilders:develop Mar 31, 2023
@boegel boegel changed the title fix paths to perl modules in MAKER v3.01.04 fix paths to Perl modules in MAKER v3.01.04 Mar 31, 2023
@lexming lexming deleted the 20230331101202_new_pr_MAKER30104 branch April 1, 2023 09:25
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