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add wrapper for Julia with linking safeguards and delegate environment setup to JuliaPackage #20103

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Merged
branfosj merged 5 commits into from
Jul 3, 2024
Merged

add wrapper for Julia with linking safeguards and delegate environment setup to JuliaPackage #20103

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9a12aa2
add wrapper for Julia with linking safeguards and delegate environmen…
lexming Mar 13, 2024
36fdc53
adding file julia.wrapper
lexming Mar 13, 2024
72a2299
use generic posix shell in julia wrapper
lexming May 8, 2024
45a5f1b
Merge branch 'develop' into 20240313112943_new_pr_Julia1100
lexming May 8, 2024
116ab0c
update checksum of julia.wrapper
lexming May 10, 2024
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21 changes: 10 additions & 11 deletions easybuild/easyconfigs/j/Julia/Julia-1.10.0-linux-x86_64.eb
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Original file line number Diff line number Diff line change
Expand Up @@ -11,21 +11,20 @@ toolchain = SYSTEM

source_urls = ['https://julialang-s3.julialang.org/bin/linux/x64/%(version_major_minor)s/']
sources = ['%(namelower)s-%(version)s%(versionsuffix)s.tar.gz']
checksums = ['a7298207f72f2b27b2ab1ce392a6ea37afbd1fbee0f1f8d190b054dcaba878fe']
patches = [('julia.wrapper', 'bin/')]
checksums = [
{'julia-1.10.0-linux-x86_64.tar.gz': 'a7298207f72f2b27b2ab1ce392a6ea37afbd1fbee0f1f8d190b054dcaba878fe'},
{'julia.wrapper': 'd10aeaff53cca9875f7b0ce9218eae3bd21870b654e26c4c52aa8bfcc9da702d'},
]

# install wrapper with linking safeguards for Julia libraries
postinstallcmds = ["cd %(installdir)s/bin && mv julia julia.bin && mv julia.wrapper julia"]

sanity_check_paths = {
'files': ['bin/julia', 'include/julia/julia.h', 'lib/libjulia.%s' % SHLIB_EXT],
'dirs': ['bin', 'etc', 'include', 'lib', 'share']
'files': ['bin/julia', 'bin/julia.bin', 'include/julia/julia.h', 'lib/libjulia.%s' % SHLIB_EXT],
'dirs': ['bin', 'etc', 'include', 'lib', 'lib/julia', 'share']
}

sanity_check_commands = ['julia --help']

modextrapaths_append = {
# Use default DEPOT_PATH where first entry is user's depot.
# JULIA_DEPOT_PATH must be set to be able to load other JuliaPackage modules and have
# those installations appended to DEPOT_PATH without disabling any of the default paths.
# Appending ':' to make sure we don't override the user's custom JULIA_DEPOT_PATH if set.
'JULIA_DEPOT_PATH': ':',
}

moduleclass = 'lang'
20 changes: 10 additions & 10 deletions easybuild/easyconfigs/j/Julia/Julia-1.6.0-linux-aarch64.eb
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Original file line number Diff line number Diff line change
Expand Up @@ -15,20 +15,20 @@ toolchain = SYSTEM

source_urls = ['https://julialang-s3.julialang.org/bin/linux/aarch64/%(version_major_minor)s/']
sources = ['%(namelower)s-%(version)s%(versionsuffix)s.tar.gz']
checksums = ['0f496972d26cea88151204d03e6bd87702aa1ff983de3b1e4f320c48ef67325f']
patches = [('julia.wrapper', 'bin/')]
checksums = [
{'julia-1.6.0-linux-aarch64.tar.gz': '0f496972d26cea88151204d03e6bd87702aa1ff983de3b1e4f320c48ef67325f'},
{'julia.wrapper': 'd10aeaff53cca9875f7b0ce9218eae3bd21870b654e26c4c52aa8bfcc9da702d'},
]

# install wrapper with linking safeguards for Julia libraries
postinstallcmds = ["cd %(installdir)s/bin && mv julia julia.bin && mv julia.wrapper julia"]

sanity_check_paths = {
'files': ['bin/julia', 'include/julia/julia.h', 'lib/libjulia.%s' % SHLIB_EXT],
'dirs': ['bin', 'etc', 'include', 'lib', 'share']
'files': ['bin/julia', 'bin/julia.bin', 'include/julia/julia.h', 'lib/libjulia.%s' % SHLIB_EXT],
'dirs': ['bin', 'etc', 'include', 'lib', 'lib/julia', 'share']
}

sanity_check_commands = ['julia --help']

modextravars = {
# Use default DEPOT_PATH where first entry is user's depot
# JULIA_DEPOT_PATH must be set to be able to load other JuliaPackage modules and have
# those installations appended to DEPOT_PATH without disabling any of the default paths
'JULIA_DEPOT_PATH': ':',
}

moduleclass = 'lang'
20 changes: 10 additions & 10 deletions easybuild/easyconfigs/j/Julia/Julia-1.6.5-linux-x86_64.eb
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Original file line number Diff line number Diff line change
Expand Up @@ -19,20 +19,20 @@ toolchain = SYSTEM

source_urls = ['https://julialang-s3.julialang.org/bin/linux/x64/%(version_major_minor)s/']
sources = ['%(namelower)s-%(version)s%(versionsuffix)s.tar.gz']
checksums = ['b8fe23ee547254a2fe14be587284ed77c78c06c2d8e9aad5febce0d21cab8e2c']
patches = [('julia.wrapper', 'bin/')]
checksums = [
{'julia-1.6.5-linux-x86_64.tar.gz': 'b8fe23ee547254a2fe14be587284ed77c78c06c2d8e9aad5febce0d21cab8e2c'},
{'julia.wrapper': 'd10aeaff53cca9875f7b0ce9218eae3bd21870b654e26c4c52aa8bfcc9da702d'},
]

# install wrapper with linking safeguards for Julia libraries
postinstallcmds = ["cd %(installdir)s/bin && mv julia julia.bin && mv julia.wrapper julia"]

sanity_check_paths = {
'files': ['bin/julia', 'include/julia/julia.h', 'lib/libjulia.%s' % SHLIB_EXT],
'dirs': ['bin', 'etc', 'include', 'lib', 'share']
'files': ['bin/julia', 'bin/julia.bin', 'include/julia/julia.h', 'lib/libjulia.%s' % SHLIB_EXT],
'dirs': ['bin', 'etc', 'include', 'lib', 'lib/julia', 'share']
}

sanity_check_commands = ['julia --help']

modextravars = {
# Use default DEPOT_PATH where first entry is user's depot
# JULIA_DEPOT_PATH must be set to be able to load other JuliaPackage modules and have
# those installations appended to DEPOT_PATH without disabling any of the default paths
'JULIA_DEPOT_PATH': ':',
}

moduleclass = 'lang'
21 changes: 10 additions & 11 deletions easybuild/easyconfigs/j/Julia/Julia-1.6.6-linux-x86_64.eb
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Original file line number Diff line number Diff line change
Expand Up @@ -19,20 +19,19 @@ toolchain = SYSTEM

source_urls = ['https://julialang-s3.julialang.org/bin/linux/x64/%(version_major_minor)s/']
sources = ['%(namelower)s-%(version)s%(versionsuffix)s.tar.gz']
checksums = ['c25ff71a4242207ab2681a0fcc5df50014e9d99f814e77cacbc5027e20514945']
patches = [('julia.wrapper', 'bin/')]
checksums = [
{'julia-1.6.6-linux-x86_64.tar.gz': 'c25ff71a4242207ab2681a0fcc5df50014e9d99f814e77cacbc5027e20514945'},
{'julia.wrapper': 'd10aeaff53cca9875f7b0ce9218eae3bd21870b654e26c4c52aa8bfcc9da702d'},
]

# install wrapper with linking safeguards for Julia libraries
postinstallcmds = ["cd %(installdir)s/bin && mv julia julia.bin && mv julia.wrapper julia"]

sanity_check_paths = {
'files': ['bin/julia', 'include/julia/julia.h', 'lib/libjulia.%s' % SHLIB_EXT],
'dirs': ['bin', 'etc', 'include', 'lib', 'share']
'files': ['bin/julia', 'bin/julia.bin', 'include/julia/julia.h', 'lib/libjulia.%s' % SHLIB_EXT],
'dirs': ['bin', 'etc', 'include', 'lib', 'lib/julia', 'share']
}

sanity_check_commands = ['julia --help']

modextravars = {
# Use default DEPOT_PATH where first entry is user's depot
# JULIA_DEPOT_PATH must be set to be able to load other JuliaPackage modules and have
# those installations appended to DEPOT_PATH without disabling any of the default paths
'JULIA_DEPOT_PATH': ':',
}

moduleclass = 'lang'
21 changes: 10 additions & 11 deletions easybuild/easyconfigs/j/Julia/Julia-1.6.7-linux-x86_64.eb
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Original file line number Diff line number Diff line change
Expand Up @@ -19,20 +19,19 @@ toolchain = SYSTEM

source_urls = ['https://julialang-s3.julialang.org/bin/linux/x64/%(version_major_minor)s/']
sources = ['%(namelower)s-%(version)s%(versionsuffix)s.tar.gz']
checksums = ['6c4522d595e4cbcd00157ac458a72f8aec01757053d2073f99daa39e442b2a36']
patches = [('julia.wrapper', 'bin/')]
checksums = [
{'julia-1.6.7-linux-x86_64.tar.gz': '6c4522d595e4cbcd00157ac458a72f8aec01757053d2073f99daa39e442b2a36'},
{'julia.wrapper': 'd10aeaff53cca9875f7b0ce9218eae3bd21870b654e26c4c52aa8bfcc9da702d'},
]

# install wrapper with linking safeguards for Julia libraries
postinstallcmds = ["cd %(installdir)s/bin && mv julia julia.bin && mv julia.wrapper julia"]

sanity_check_paths = {
'files': ['bin/julia', 'include/julia/julia.h', 'lib/libjulia.%s' % SHLIB_EXT],
'dirs': ['bin', 'etc', 'include', 'lib', 'share']
'files': ['bin/julia', 'bin/julia.bin', 'include/julia/julia.h', 'lib/libjulia.%s' % SHLIB_EXT],
'dirs': ['bin', 'etc', 'include', 'lib', 'lib/julia', 'share']
}

sanity_check_commands = ['julia --help']

modextravars = {
# Use default DEPOT_PATH where first entry is user's depot
# JULIA_DEPOT_PATH must be set to be able to load other JuliaPackage modules and have
# those installations appended to DEPOT_PATH without disabling any of the default paths
'JULIA_DEPOT_PATH': ':',
}

moduleclass = 'lang'
21 changes: 10 additions & 11 deletions easybuild/easyconfigs/j/Julia/Julia-1.7.0-linux-x86_64.eb
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Original file line number Diff line number Diff line change
Expand Up @@ -19,20 +19,19 @@ toolchain = SYSTEM

source_urls = ['https://julialang-s3.julialang.org/bin/linux/x64/%(version_major_minor)s/']
sources = ['%(namelower)s-%(version)s%(versionsuffix)s.tar.gz']
checksums = ['7299f3a638aec5e0b9e14eaf0e6221c4fe27189aa0b38ac5a36f03f0dc4c0d40']
patches = [('julia.wrapper', 'bin/')]
checksums = [
{'julia-1.7.0-linux-x86_64.tar.gz': '7299f3a638aec5e0b9e14eaf0e6221c4fe27189aa0b38ac5a36f03f0dc4c0d40'},
{'julia.wrapper': 'd10aeaff53cca9875f7b0ce9218eae3bd21870b654e26c4c52aa8bfcc9da702d'},
]

# install wrapper with linking safeguards for Julia libraries
postinstallcmds = ["cd %(installdir)s/bin && mv julia julia.bin && mv julia.wrapper julia"]

sanity_check_paths = {
'files': ['bin/julia', 'include/julia/julia.h', 'lib/libjulia.%s' % SHLIB_EXT],
'dirs': ['bin', 'etc', 'include', 'lib', 'share']
'files': ['bin/julia', 'bin/julia.bin', 'include/julia/julia.h', 'lib/libjulia.%s' % SHLIB_EXT],
'dirs': ['bin', 'etc', 'include', 'lib', 'lib/julia', 'share']
}

sanity_check_commands = ['julia --help']

modextravars = {
# Use default DEPOT_PATH where first entry is user's depot
# JULIA_DEPOT_PATH must be set to be able to load other JuliaPackage modules and have
# those installations appended to DEPOT_PATH without disabling any of the default paths
'JULIA_DEPOT_PATH': ':',
}

moduleclass = 'lang'
21 changes: 10 additions & 11 deletions easybuild/easyconfigs/j/Julia/Julia-1.7.1-linux-x86_64.eb
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Original file line number Diff line number Diff line change
Expand Up @@ -19,20 +19,19 @@ toolchain = SYSTEM

source_urls = ['https://julialang-s3.julialang.org/bin/linux/x64/%(version_major_minor)s/']
sources = ['%(namelower)s-%(version)s%(versionsuffix)s.tar.gz']
checksums = ['44658e9c7b45e2b9b5b59239d190cca42de05c175ea86bc346c294a8fe8d9f11']
patches = [('julia.wrapper', 'bin/')]
checksums = [
{'julia-1.7.1-linux-x86_64.tar.gz': '44658e9c7b45e2b9b5b59239d190cca42de05c175ea86bc346c294a8fe8d9f11'},
{'julia.wrapper': 'd10aeaff53cca9875f7b0ce9218eae3bd21870b654e26c4c52aa8bfcc9da702d'},
]

# install wrapper with linking safeguards for Julia libraries
postinstallcmds = ["cd %(installdir)s/bin && mv julia julia.bin && mv julia.wrapper julia"]

sanity_check_paths = {
'files': ['bin/julia', 'include/julia/julia.h', 'lib/libjulia.%s' % SHLIB_EXT],
'dirs': ['bin', 'etc', 'include', 'lib', 'share']
'files': ['bin/julia', 'bin/julia.bin', 'include/julia/julia.h', 'lib/libjulia.%s' % SHLIB_EXT],
'dirs': ['bin', 'etc', 'include', 'lib', 'lib/julia', 'share']
}

sanity_check_commands = ['julia --help']

modextravars = {
# Use default DEPOT_PATH where first entry is user's depot
# JULIA_DEPOT_PATH must be set to be able to load other JuliaPackage modules and have
# those installations appended to DEPOT_PATH without disabling any of the default paths
'JULIA_DEPOT_PATH': ':',
}

moduleclass = 'lang'
21 changes: 10 additions & 11 deletions easybuild/easyconfigs/j/Julia/Julia-1.7.2-linux-x86_64.eb
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Original file line number Diff line number Diff line change
Expand Up @@ -19,20 +19,19 @@ toolchain = SYSTEM

source_urls = ['https://julialang-s3.julialang.org/bin/linux/x64/%(version_major_minor)s/']
sources = ['%(namelower)s-%(version)s%(versionsuffix)s.tar.gz']
checksums = ['a75244724f3b2de0e7249c861fbf64078257c16fb4203be78f1cf4dd5973ba95']
patches = [('julia.wrapper', 'bin/')]
checksums = [
{'julia-1.7.2-linux-x86_64.tar.gz': 'a75244724f3b2de0e7249c861fbf64078257c16fb4203be78f1cf4dd5973ba95'},
{'julia.wrapper': 'd10aeaff53cca9875f7b0ce9218eae3bd21870b654e26c4c52aa8bfcc9da702d'},
]

# install wrapper with linking safeguards for Julia libraries
postinstallcmds = ["cd %(installdir)s/bin && mv julia julia.bin && mv julia.wrapper julia"]

sanity_check_paths = {
'files': ['bin/julia', 'include/julia/julia.h', 'lib/libjulia.%s' % SHLIB_EXT],
'dirs': ['bin', 'etc', 'include', 'lib', 'share']
'files': ['bin/julia', 'bin/julia.bin', 'include/julia/julia.h', 'lib/libjulia.%s' % SHLIB_EXT],
'dirs': ['bin', 'etc', 'include', 'lib', 'lib/julia', 'share']
}

sanity_check_commands = ['julia --help']

modextravars = {
# Use default DEPOT_PATH where first entry is user's depot
# JULIA_DEPOT_PATH must be set to be able to load other JuliaPackage modules and have
# those installations appended to DEPOT_PATH without disabling any of the default paths
'JULIA_DEPOT_PATH': ':',
}

moduleclass = 'lang'
21 changes: 10 additions & 11 deletions easybuild/easyconfigs/j/Julia/Julia-1.7.3-linux-x86_64.eb
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Original file line number Diff line number Diff line change
Expand Up @@ -19,20 +19,19 @@ toolchain = SYSTEM

source_urls = ['https://julialang-s3.julialang.org/bin/linux/x64/%(version_major_minor)s/']
sources = ['%(namelower)s-%(version)s%(versionsuffix)s.tar.gz']
checksums = ['9b2f4fa12d92b4dcc5d11dc66fb118c47681a76d3df8da064cc97573f2f5c739']
patches = [('julia.wrapper', 'bin/')]
checksums = [
{'julia-1.7.3-linux-x86_64.tar.gz': '9b2f4fa12d92b4dcc5d11dc66fb118c47681a76d3df8da064cc97573f2f5c739'},
{'julia.wrapper': 'd10aeaff53cca9875f7b0ce9218eae3bd21870b654e26c4c52aa8bfcc9da702d'},
]

# install wrapper with linking safeguards for Julia libraries
postinstallcmds = ["cd %(installdir)s/bin && mv julia julia.bin && mv julia.wrapper julia"]

sanity_check_paths = {
'files': ['bin/julia', 'include/julia/julia.h', 'lib/libjulia.%s' % SHLIB_EXT],
'dirs': ['bin', 'etc', 'include', 'lib', 'share']
'files': ['bin/julia', 'bin/julia.bin', 'include/julia/julia.h', 'lib/libjulia.%s' % SHLIB_EXT],
'dirs': ['bin', 'etc', 'include', 'lib', 'lib/julia', 'share']
}

sanity_check_commands = ['julia --help']

modextravars = {
# Use default DEPOT_PATH where first entry is user's depot
# JULIA_DEPOT_PATH must be set to be able to load other JuliaPackage modules and have
# those installations appended to DEPOT_PATH without disabling any of the default paths
'JULIA_DEPOT_PATH': ':',
}

moduleclass = 'lang'
21 changes: 10 additions & 11 deletions easybuild/easyconfigs/j/Julia/Julia-1.8.0-linux-x86_64.eb
View file
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Original file line number Diff line number Diff line change
Expand Up @@ -19,20 +19,19 @@ toolchain = SYSTEM

source_urls = ['https://julialang-s3.julialang.org/bin/linux/x64/%(version_major_minor)s/']
sources = ['%(namelower)s-%(version)s%(versionsuffix)s.tar.gz']
checksums = ['e80d732ccb7f79e000d798cb8b656dc3641ab59516d6e4e52e16765017892a00']
patches = [('julia.wrapper', 'bin/')]
checksums = [
{'julia-1.8.0-linux-x86_64.tar.gz': 'e80d732ccb7f79e000d798cb8b656dc3641ab59516d6e4e52e16765017892a00'},
{'julia.wrapper': 'd10aeaff53cca9875f7b0ce9218eae3bd21870b654e26c4c52aa8bfcc9da702d'},
]

# install wrapper with linking safeguards for Julia libraries
postinstallcmds = ["cd %(installdir)s/bin && mv julia julia.bin && mv julia.wrapper julia"]

sanity_check_paths = {
'files': ['bin/julia', 'include/julia/julia.h', 'lib/libjulia.%s' % SHLIB_EXT],
'dirs': ['bin', 'etc', 'include', 'lib', 'share']
'files': ['bin/julia', 'bin/julia.bin', 'include/julia/julia.h', 'lib/libjulia.%s' % SHLIB_EXT],
'dirs': ['bin', 'etc', 'include', 'lib', 'lib/julia', 'share']
}

sanity_check_commands = ['julia --help']

modextravars = {
# Use default DEPOT_PATH where first entry is user's depot
# JULIA_DEPOT_PATH must be set to be able to load other JuliaPackage modules and have
# those installations appended to DEPOT_PATH without disabling any of the default paths
'JULIA_DEPOT_PATH': ':',
}

moduleclass = 'lang'
21 changes: 10 additions & 11 deletions easybuild/easyconfigs/j/Julia/Julia-1.8.2-linux-x86_64.eb
View file
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Original file line number Diff line number Diff line change
Expand Up @@ -19,20 +19,19 @@ toolchain = SYSTEM

source_urls = ['https://julialang-s3.julialang.org/bin/linux/x64/%(version_major_minor)s/']
sources = ['%(namelower)s-%(version)s%(versionsuffix)s.tar.gz']
checksums = ['671cf3a450b63a717e1eedd7f69087e3856f015b2e146cb54928f19a3c05e796']
patches = [('julia.wrapper', 'bin/')]
checksums = [
{'julia-1.8.2-linux-x86_64.tar.gz': '671cf3a450b63a717e1eedd7f69087e3856f015b2e146cb54928f19a3c05e796'},
{'julia.wrapper': 'd10aeaff53cca9875f7b0ce9218eae3bd21870b654e26c4c52aa8bfcc9da702d'},
]

# install wrapper with linking safeguards for Julia libraries
postinstallcmds = ["cd %(installdir)s/bin && mv julia julia.bin && mv julia.wrapper julia"]

sanity_check_paths = {
'files': ['bin/julia', 'include/julia/julia.h', 'lib/libjulia.%s' % SHLIB_EXT],
'dirs': ['bin', 'etc', 'include', 'lib', 'share']
'files': ['bin/julia', 'bin/julia.bin', 'include/julia/julia.h', 'lib/libjulia.%s' % SHLIB_EXT],
'dirs': ['bin', 'etc', 'include', 'lib', 'lib/julia', 'share']
}

sanity_check_commands = ['julia --help']

modextravars = {
# Use default DEPOT_PATH where first entry is user's depot
# JULIA_DEPOT_PATH must be set to be able to load other JuliaPackage modules and have
# those installations appended to DEPOT_PATH without disabling any of the default paths
'JULIA_DEPOT_PATH': ':',
}

moduleclass = 'lang'
19 changes: 9 additions & 10 deletions easybuild/easyconfigs/j/Julia/Julia-1.8.5-linux-x86_64.eb
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -19,20 +19,19 @@ toolchain = SYSTEM

source_urls = ['https://julialang-s3.julialang.org/bin/linux/x64/%(version_major_minor)s/']
sources = ['%(namelower)s-%(version)s%(versionsuffix)s.tar.gz']
checksums = ['e71a24816e8fe9d5f4807664cbbb42738f5aa9fe05397d35c81d4c5d649b9d05']
patches = [('julia.wrapper', 'bin/')]
checksums = [
{'julia-1.8.5-linux-x86_64.tar.gz': 'e71a24816e8fe9d5f4807664cbbb42738f5aa9fe05397d35c81d4c5d649b9d05'},
{'julia.wrapper': 'd10aeaff53cca9875f7b0ce9218eae3bd21870b654e26c4c52aa8bfcc9da702d'},
]

postinstallcmds = ["cd %(installdir)s/bin && mv julia julia.bin && mv julia.wrapper julia"]

sanity_check_paths = {
'files': ['bin/julia', 'include/julia/julia.h', 'lib/libjulia.%s' % SHLIB_EXT],
'dirs': ['bin', 'etc', 'include', 'lib', 'share']
'files': ['bin/julia', 'bin/julia.bin', 'include/julia/julia.h', 'lib/libjulia.%s' % SHLIB_EXT],
'dirs': ['bin', 'etc', 'include', 'lib', 'lib/julia', 'share']
}

sanity_check_commands = ['julia --help']

modextravars = {
# Use default DEPOT_PATH where first entry is user's depot
# JULIA_DEPOT_PATH must be set to be able to load other JuliaPackage modules and have
# those installations appended to DEPOT_PATH without disabling any of the default paths
'JULIA_DEPOT_PATH': ':',
}

moduleclass = 'lang'
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