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{lang} [foss/2016b] MXNet/0.9.3 (REVIEW) #4346
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7663278
Bump R to 3.3.3 with updated extensions for MXNet
wpoely86 5c5cf29
Added MXNet/0.9.3
wpoely86 1c7e2a7
Small fixes
wpoely86 14dfce1
Fix version suffix
wpoely86 7f904d0
Merge remote-tracking branch 'origin/develop' into mxnet
wpoely86 d4b8132
MXNet: bump nnvm commit id
wpoely86 9d80d1e
Use full URL in MXNet
wpoely86 4738ac7
Merge remote-tracking branch 'origin/develop' into mxnet
wpoely86 4fd3c4f
Merge remote-tracking branch 'origin/develop' into mxnet
wpoely86 f7abece
Adjust to merge with develop
wpoely86 d240a00
Add missing deps
wpoely86 8225fff
Drop wrong easyconfig
wpoely86 06f3111
Add correct files to PR
wpoely86 3cdc2f9
Add missing easyconfigs
wpoely86 5bcc762
Forgot one
wpoely86 2f7a0b1
Sync GObject-Introspection and GLib version
wpoely86 de3eef4
Fix patch for Graphviz
wpoely86 a14e107
Add forgotten patch
wpoely86 50b5785
Fix conflict
wpoely86 43298d3
Fix missing patch
wpoely86 78155e5
Fix postinstallcmd for OpenCV
wpoely86 5301cfd
Switch java version
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,25 @@ | ||
| easyblock = 'ConfigureMake' | ||
|
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| name = 'GTS' | ||
| version = '0.7.6' | ||
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| homepage = 'http://gts.sourceforge.net/' | ||
| description = """GTS stands for the GNU Triangulated Surface Library. | ||
| It is an Open Source Free Software Library intended to provide a set of useful | ||
| functions to deal with 3D surfaces meshed with interconnected triangles.""" | ||
|
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| toolchain = {'name': 'intel', 'version': '2017a'} | ||
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| source_urls = [SOURCEFORGE_SOURCE] | ||
| sources = [SOURCELOWER_TAR_GZ] | ||
|
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| dependencies = [ | ||
| ('GLib', '2.52.0'), | ||
| ] | ||
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| sanity_check_paths = { | ||
| 'files': ['lib/libgts.%s' % SHLIB_EXT, 'bin/gts2oogl', 'bin/gtscheck'], | ||
| 'dirs': [] | ||
| } | ||
|
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| moduleclass = 'vis' |
67 changes: 67 additions & 0 deletions
67
easybuild/easyconfigs/g/Graphviz/Graphviz-2.40.1-intel-2017a.eb
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,67 @@ | ||
| easyblock = 'ConfigureMake' | ||
|
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| name = 'Graphviz' | ||
| version = '2.40.1' | ||
|
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| homepage = 'http://www.graphviz.org/' | ||
| description = """Graphviz is open source graph visualization software. Graph visualization | ||
| is a way of representing structural information as diagrams of | ||
| abstract graphs and networks. It has important applications in networking, | ||
| bioinformatics, software engineering, database and web design, machine learning, | ||
| and in visual interfaces for other technical domains.""" | ||
|
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| toolchain = {'name': 'intel', 'version': '2017a'} | ||
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| source_urls = ['http://www.graphviz.org/pub/graphviz/stable/SOURCES/'] | ||
| sources = [SOURCELOWER_TAR_GZ] | ||
|
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| dependencies = [ | ||
| ('cairo', '1.14.8'), | ||
| ('expat', '2.2.0'), | ||
| ('freetype', '2.7.1'), | ||
| ('Ghostscript', '9.21'), | ||
| ('GTS', '0.7.6'), | ||
| ('Java', '1.8.0_131', '', True), | ||
| ('libpng', '1.6.29'), | ||
| ('Pango', '1.40.5'), | ||
| ('Perl', '5.24.1'), | ||
| ('Qt', '4.8.7'), | ||
| ('Tcl', '8.6.6'), | ||
| ('zlib', '1.2.11'), | ||
| ] | ||
|
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| builddependencies = [ | ||
| ('M4', '1.4.18'), | ||
| ('SWIG', '3.0.12', '-Python-2.7.13'), | ||
| ] | ||
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| patches = [ | ||
| 'Graphviz-2.38.0_icc_vmalloc.patch', | ||
| 'Graphviz-2.38.0_icc_sfio.patch', | ||
| ] | ||
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| preconfigopts = "sed -i 's/install-data-hook$//g' tclpkg/Makefile.in && " | ||
| configopts = '--enable-guile=no --enable-lua=no --enable-ocaml=no ' | ||
| configopts += '--enable-r=no --enable-ruby=no ' | ||
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| prebuildopts = 'qmake -o cmd/gvedit/qMakefile cmd/gvedit/gvedit.pro && ' | ||
|
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| sanity_check_paths = { | ||
| 'files': ['bin/cluster', 'bin/dot', 'bin/gvmap', | ||
| 'lib/libcdt.%s' % SHLIB_EXT, 'lib/libgvc.%s' % SHLIB_EXT, 'lib/libxdot.%s' % SHLIB_EXT], | ||
| 'dirs': ['include', 'lib/graphviz'] | ||
| } | ||
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| sanity_check_commands = [ | ||
| ("test ! -d $EBROOTTCL/lib/*/graphviz", ''), | ||
| ("test ! -d $EBROOTTCL/lib64/*/graphviz", ''), | ||
| ] | ||
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| modextrapaths = { | ||
| 'PYTHONPATH': 'lib/graphviz/python', | ||
| 'CLASSPATH': 'lib/graphviz/java/org/graphviz', | ||
| 'LD_LIBRARY_PATH': 'lib/graphviz/java', | ||
| 'TCLLIBPATH': 'lib/graphviz/tcl', | ||
| } | ||
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| moduleclass = 'vis' |
25 changes: 25 additions & 0 deletions
25
easybuild/easyconfigs/g/graphviz/graphviz-0.7.1-intel-2017a-Python-2.7.13.eb
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,25 @@ | ||
| easyblock = 'PythonPackage' | ||
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| name = 'graphviz' | ||
| version = '0.7.1' | ||
| versionsuffix = '-Python-%(pyver)s' | ||
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| homepage = 'https://pypi.python.org/pypi/graphviz' | ||
| description = """Simple Python interface for Graphviz""" | ||
|
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| toolchain = {'name': 'intel', 'version': '2017a'} | ||
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| source_urls = [PYPI_SOURCE] | ||
| sources = [SOURCE_ZIP] | ||
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| dependencies = [ | ||
| ('Python', '2.7.13'), | ||
| ('Graphviz', '2.40.1'), | ||
| ] | ||
|
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| sanity_check_paths = { | ||
| 'files': [], | ||
| 'dirs': ['lib/python%(pyshortver)s/site-packages'], | ||
| } | ||
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| moduleclass = 'vis' |
38 changes: 38 additions & 0 deletions
38
easybuild/easyconfigs/m/MXNet/MXNet-0.9.3-foss-2016b-Python-2.7.12.eb
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,38 @@ | ||
| name = 'MXNet' | ||
| version = '0.9.3' | ||
| versionsuffix = '-Python-%(pyver)s-R-%(rver)s' | ||
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| homepage = 'http://mxnet.io/' | ||
| description = """Flexible and Efficient Library for Deep Learning""" | ||
|
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| toolchain = {'name': 'foss', 'version': '2016b'} | ||
| toolchainopts = {'cstd': 'c++11', 'opt': True, 'pic': True, 'openmp': True} | ||
|
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| source_urls = ['https://github.com/dmlc/mxnet/archive'] | ||
|
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| # MXNet pulls in a bunch of submodules which don't have releases. | ||
| # We download the current HEAD of the repos at the current time (13/03/17) | ||
| sources = [ | ||
| 'v%(version)s.tar.gz', # MXNet | ||
| 'https://github.com/dmlc/ps-lite/archive/6856021ca925c7.tar.gz', # ps-lite | ||
| 'https://github.com/dmlc/mshadow/archive/c29ac58320d7b0.tar.gz', # mshadow | ||
| 'https://github.com/dmlc/nnvm/archive/0d64855f741e04.tar.gz', # nnvm | ||
| 'https://github.com/dmlc/dmlc-core/archive/b32ec4aee65a66.tar.gz', # dmlc-core | ||
| ] | ||
|
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| checksums = [ | ||
| "84971e4a0e2e9db3757623657aa5b9ec", # v0.9.3.tar.gz | ||
| "12c96664978c545a7269b93635719b18", # 6856021ca925c7.tar.gz | ||
| "3dc48183e123c650707bcf26a9254941", # c29ac58320d7b0.tar.gz | ||
| "fb04cb1694f1e66591a31a18bc92b451", # 0d64855f741e04.tar.gz | ||
| "da873c881758c0e10ac0928f86568456", # b32ec4aee65a66.tar.gz | ||
| ] | ||
|
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| dependencies = [ | ||
| ('Python', '2.7.12'), | ||
| ('graphviz', '0.5.1', '-Python-%(pyver)s'), | ||
| ('OpenCV', '3.1.0'), | ||
| ('R', '3.3.3', '-X11-20160819'), | ||
| ] | ||
|
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| moduleclass = 'math' |
38 changes: 38 additions & 0 deletions
38
easybuild/easyconfigs/m/MXNet/MXNet-0.9.3-intel-2017a-Python-2.7.13-R-3.4.0.eb
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,38 @@ | ||
| name = 'MXNet' | ||
| version = '0.9.3' | ||
| versionsuffix = '-Python-%(pyver)s-R-%(rver)s' | ||
|
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| homepage = 'http://mxnet.io/' | ||
| description = """Flexible and Efficient Library for Deep Learning""" | ||
|
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| toolchain = {'name': 'intel', 'version': '2017a'} | ||
| toolchainopts = {'cstd': 'c++11', 'opt': True, 'pic': True, 'openmp': True} | ||
|
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| source_urls = ['https://github.com/dmlc/mxnet/archive'] | ||
|
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| # MXNet pulls in a bunch of submodules which don't have releases. | ||
| # We download the current HEAD of the repos at the current time (13/03/17) | ||
| sources = [ | ||
| 'v%(version)s.tar.gz', # MXNet | ||
| 'https://github.com/dmlc/ps-lite/archive/6856021ca925c7.tar.gz', # ps-lite | ||
| 'https://github.com/dmlc/mshadow/archive/c29ac58320d7b0.tar.gz', # mshadow | ||
| 'https://github.com/dmlc/nnvm/archive/0d64855f741e04.tar.gz', # nnvm | ||
| 'https://github.com/dmlc/dmlc-core/archive/b32ec4aee65a66.tar.gz', # dmlc-core | ||
| ] | ||
|
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| checksums = [ | ||
| "84971e4a0e2e9db3757623657aa5b9ec", # v0.9.3.tar.gz | ||
| "12c96664978c545a7269b93635719b18", # 6856021ca925c7.tar.gz | ||
| "3dc48183e123c650707bcf26a9254941", # c29ac58320d7b0.tar.gz | ||
| "fb04cb1694f1e66591a31a18bc92b451", # 0d64855f741e04.tar.gz | ||
| "da873c881758c0e10ac0928f86568456", # b32ec4aee65a66.tar.gz | ||
| ] | ||
|
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| dependencies = [ | ||
| ('Python', '2.7.13'), | ||
| ('graphviz', '0.7.1', '-Python-%(pyver)s'), | ||
| ('OpenCV', '3.2.0'), | ||
| ('R', '3.4.0', '-X11-20170314'), | ||
| ] | ||
|
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| moduleclass = 'math' |
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@wpoely86 these are enabled by default, no point in adding them?
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sorry, wrong file added. Too many files in my repo