Updating to the latest copier version.

[drewoldag]

This PR is the result of running copier update ..

Note that the biggest change I made was to remove support for 3.9 and add support for 3.13. Due to this change, the "average" python version we use for github workflows is now 3.11 instead of 3.10.

[Copilot]

Pull request overview

This PR updates the project to the latest copier template version (v2.0.5 → v2.1.1), which includes several modernization changes. The most significant change is dropping Python 3.9 support and adding Python 3.13 support, shifting the default Python version from 3.10 to 3.11 across all CI/CD workflows.

Key changes:

• Python version support updated: removed 3.9, added 3.13, with 3.11 as the new default for workflows
• Modernized package installer: workflows now use uv instead of pip for faster dependency installation
• Enhanced bash scripting: .setup_dev.sh updated with unofficial strict mode for better error handling

Reviewed changes

Copilot reviewed 18 out of 18 changed files in this pull request and generated 1 comment.

Show a summary per file

File	Description
.copier-answers.yml	Updated copier template version and Python version list
.github/ISSUE_TEMPLATE/1-bug_report.md	Enhanced bug report template with environment information section
.github/workflows/asv-main.yml	Updated to Python 3.11 and ASV 0.6.5
.github/workflows/asv-nightly.yml	Updated to Python 3.11 and ASV 0.6.5
.github/workflows/asv-pr.yml	Updated to Python 3.11 and ASV 0.6.5
.github/workflows/build-documentation.yml	Updated to Python 3.11
.github/workflows/pre-commit-ci.yml	Updated to Python 3.11 and added uv installer
.github/workflows/publish-to-pypi.yml	Updated to Python 3.11
.github/workflows/smoke-test.yml	Updated Python version matrix and added uv installer
.github/workflows/testing-and-coverage.yml	Updated Python version matrix and added uv installer
.pre-commit-config.yaml	Updated validate-pyproject hook to v0.24.1
.readthedocs.yml	Updated to Python 3.11
.setup_dev.sh	Added bash strict mode and updated virtual environment detection (contains version parsing bug)
LICENSE	Updated copyright year to 2025
benchmarks/asv.conf.json	Updated default Python version to 3.11
docs/conf.py	Updated copyright year to 2025
pyproject.toml	Modernized license format, updated Python requirement to >=3.10, updated ruff target, removed black/isort config, updated asv dependency
tests/hyrax/test_packaging.py	Added new test to verify package version attribute

[Copilot]

The version parsing on this line is broken due to the IFS change on line 8. The new strict mode sets IFS=$'\n\t' (newline and tab only), which means array splitting won't happen on spaces anymore. The sed replacement pattern 's/\./\n\t/g' attempts to replace dots with newline+tab, but:

1. In sed's replacement string, \n is not universally supported (it's GNU sed specific and version-dependent). It may produce literal characters instead of actual newlines.
2. Even if it works, the mixed newline+tab delimiter is unusual and fragile.

The original code used 's/\./ /g' to replace dots with spaces and relied on the default IFS (which includes spaces) for array splitting. To fix this, either:

• Temporarily reset IFS before the array assignment: IFS=' ' pipversion=( ... )
• Or use a different approach that works with the new IFS, such as: IFS=$'\n' pipversion=( $(python -m pip --version | awk '{print $2}' | sed 's/\./\n/g') )

Suggested change

	pipversion=( $(python -m pip --version | awk '{print $2}' | sed 's/\./\n\t/g') )
	IFS='.' read -ra pipversion <<< "$(python -m pip --version | awk '{print $2}')"

[codecov]

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 55.28%. Comparing base (171a926) to head (7fb71be).
⚠️ Report is 114 commits behind head on main.

Additional details and impacted files

@@            Coverage Diff             @@
##             main     #545      +/-   ##
==========================================
- Coverage   55.31%   55.28%   -0.03%     
==========================================
  Files          52       52              
  Lines        5055     5052       -3     
==========================================
- Hits         2796     2793       -3     
  Misses       2259     2259              

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[github-actions]

Before [171a926]	After [d188404]	Ratio	Benchmark (Parameter)
1.63±0.01s	1.72±0.01s	1.06	benchmarks.time_database_connection_help
1.60±0.01s	1.70±0.03s	1.06	benchmarks.time_help
1.64±0.01s	1.71±0.03s	1.04	benchmarks.time_download_help
1.61±0.01s	1.68±0.03s	1.04	benchmarks.time_lookup_help
1.63±0.02s	1.70±0.03s	1.04	benchmarks.time_save_to_database_help
1.62±0.02s	1.69±0.03s	1.04	benchmarks.time_umap_help
52.0±0.7ms	53.7±1ms	1.03	benchmarks.time_import
1.61±0.01s	1.66±0.01s	1.03	benchmarks.time_infer_help
1.60±0.01s	1.65±0.01s	1.03	benchmarks.time_prepare_help
1.62±0.01s	1.67±0.01s	1.03	benchmarks.time_rebuild_manifest_help

Click here to view all benchmarks.

[aritraghsh09]

This looks good to me. No comments!