Remove processing of R2 reverse reads, check for fastq files, use Python 3.6, and badge fixes #7
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…tq.gz files (#1) * Added a check for reversed reads. If present, program will skip it. Helps with having a cleaner counts table. * Added a check for fastq and fastq.gz sequence files * NEED THIS TO TEST TRAVIS CI * Forgot -s option to view stdout * Getting tired... * See if this works * Lets keep going * Lets keep going mjmlab#2 * Fixed Travis CI. Need to stay with python 3.6. * Final fix
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@mandel01 If everything looks good, feel free to squash and merge. |
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Looks great! For the docs, maybe edit:
to read
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- Can run `barseq` without providing barcode files - Improved code functions - Updated test functions - Can now modify flanking seq and barcode length to search
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Added a check for reversed reads. If present, the program will skip it. Helps with having a cleaner counts table.
Added a check for fastq and fastq.gz sequence files
Update badges in README.md
Refactored rules in Makefile
Fixed Travis CI yml. Need to stay with python 3.6.