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Locating Lesions
🎯
Locating Lesions

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mrokuss/README.md

Hi there 👋

I'm Max, a PhD researcher at the German Cancer Research Center (DKFZ), working at the intersection of deep learning and medical imaging. My research centers on segmentation, temporality and text—developing promptable, interactive tools for longitudinal analysis, tracking, and multimodal understanding. I aim to make these technologies intuitive, reliable, and accessible for both research and clinical use.

🧠 My Projects

I'm also a maintainer and contributor to the well-known nnU-Net GitHub stars framework - one of the cornerstones of modern medical image segmentation.

Aside from my main projects I regularly participate in a variety of challenges in the CVPR, MICCAI and other communities:

  • 🥇 Foundation Models for Interactive 3D Biomedical Image Segmentation @ CVPR 2025 – First place using nnInteractive
  • 🥇 1st place PANTHER @ MICCAI 2025 - Pancreatic Tumor Segmentation in Diagnostic & Linac MRIs
  • 🥇 1st place ODELIA @ MICCAI 2025 - Breast Cancer Classification in MRI
  • 🥇 1st place autoPET @ MICCAI 2024 – PET/CT lesion segmentation across multiple tracers and centers
  • 🥇 1st place TopCoW @ MICCAI 2023 – Multiclass brain vasculature segmentation
  • 🥇 1st place ToothFairy @ MICCAI 2024 – Part of the winning team in CBCT segmentation for surgical planning
  • 🥉 3rd place AortaSeg @ MICCAI 2024 – High-resolution aortic multiclass segmentation
  • 💰 Kaggle Vesuvius Challenge 2023 – 7th out of 1514, $6,500 prize for ancient ink detection

More stuff about me

Feel free to reach out if you're interested in collaboration or just want to chat!

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  1. MIC-DKFZ/nnUNet MIC-DKFZ/nnUNet Public

    Python 7.5k 2.2k

  2. MIC-DKFZ/nnInteractive MIC-DKFZ/nnInteractive Public

    nnInteractive is a framework for 3D interactive segmentation, supporting intuitive prompts like points, scribbles, bounding boxes, and lasso. Trained on 120+ diverse 3D datasets, it sets a new stan…

    Python 299 32

  3. MIC-DKFZ/Skeleton-Recall MIC-DKFZ/Skeleton-Recall Public

    Skeleton Recall Loss for Connectivity Conserving and Resource Efficient Segmentation of Thin Tubular Structures

    Python 114 11

  4. MIC-DKFZ/LesionLocator MIC-DKFZ/LesionLocator Public

    LesionLocator is a framework for zero-shot lesion segmentation and longitudinal tumor tracking in 3D full-body imaging.

    Python 70 6

  5. MIC-DKFZ/LongiSeg MIC-DKFZ/LongiSeg Public

    Python 28 4

  6. MIC-DKFZ/autopet-3-submission MIC-DKFZ/autopet-3-submission Public

    Python 15 1