Issues

• Trichophyton (and Pirella, Tubercularia) classified as bacteria since taxonomy update

  msberends/AMR#309 · Filter by author msberends opened on Oct 1, 2026 · v3.1.0

• WHONET agent codes SUD and ROX resolve to the wrong antimicrobials in clinical_breakpoints

  msberends/AMR#308 · Filter by author msberends opened on Oct 1, 2026 · v3.1.0

• Feature request: trade-name synonyms for existing codes (Korean list ready) + Unicode-safe name generalisation

  enhancement
  msberends/AMR#307 · Filter by author tori0513 opened on Sep 19, 2026 · v3.2.0
  2

• AMR package did not check antibiotic disc content before interpreting

  bug
  msberends/AMR#306 · Filter by author anhvtn-oucru opened on Sep 16, 2026 · v3.2.0
  1

• Custom reference_data in as.sir does not work for breakpoint_type "animal"

  bug
  msberends/AMR#303 · Filter by author samueljpearce opened on Jul 20, 2026 · v3.2.0
  1

• Add EUCAST breakpoint import tooling with rich text (superscript) handling

  enhancement
  msberends/AMR#302 · Filter by author msberends opened on Jul 9, 2026
  2

• as.sir(): capped MIC prefix handling incorrect when S breakpoint equals lowest valid MIC (e.g. CIP in Staphylococcus)

  bug
  msberends/AMR#295 · Filter by author msberends opened on Jun 22, 2026 · v3.1.0

• Update EUCAST expert rules versioning to month+year format

  enhancement
  msberends/AMR#294 · Filter by author msberends opened on Jun 22, 2026 · v3.2.0

• Python package crashes on Windows with Traditional Chinese locale (rpy2 access violation)

  bugwaiting for others
  msberends/AMR#292 · Filter by author ChijenHuang0 opened on May 25, 2026
  1

• Referral issue in EUCAST Expert Rules

  bug
  msberends/AMR#290 · Filter by author msberends opened on May 8, 2026 · v3.1.0

• Include S. argenteus (and others) under S. aureus (complex) in as.mo()

  enhancementrequires thinking
  msberends/AMR#248 · Filter by author Ger-JanF opened on Jan 14, 2026 · v3.2.0

• Convert all S3 to S7?

  backlogenhancement
  msberends/AMR#238 · Filter by author msberends opened on Sep 19, 2025
  1

• Incorporate NARMS breakpoints

  enhancement
  msberends/AMR#237 · Filter by author befriendabacterium opened on Sep 12, 2025 · v3.2.0
  2

• Add antibiogram for MICs

  enhancement
  msberends/AMR#203 · Filter by author msberends opened on Apr 25, 2025 · v3.2.0

• Adding CLSI data for intrinsic resistances

  enhancement
  msberends/AMR#199 · Filter by author ConnorChato opened on Mar 27, 2025 · v3.2.0
  2

• For breakpoints, allow NS (non-susceptible) as a possible outcome of as.sir()

  enhancement
  msberends/AMR#196 · Filter by author msberends opened on Mar 14, 2025 · v3.2.0
  1

• Adding custom groups (not currently functional with add_custom_microbials() or built-in data objects)

  enhancement
  msberends/AMR#189 · Filter by author ConnorChato opened on Feb 12, 2025 · v3.2.0
  2

• Prepare comprehensive VetMed implementation

  enhancement
  msberends/AMR#187 · Filter by author msberends opened on Jan 31, 2025 · v3.2.0

• Set attributes for SIR values with their interpretation history

  enhancement
  msberends/AMR#170 · Filter by author msberends opened on Oct 7, 2024 · v3.2.0

• Extrapolating breakpoints for animals in line with CLSI VET09 document

  enhancement
  msberends/AMR#165 · Filter by author samueljpearce opened on Sep 6, 2024 · v3.2.0
  5