[pre-commit.ci] pre-commit autoupdate #131
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updates: - [github.com/astral-sh/ruff-pre-commit: v0.2.0 → v0.3.0](astral-sh/ruff-pre-commit@v0.2.0...v0.3.0) - [github.com/psf/black: 24.1.1 → 24.2.0](psf/black@24.1.1...24.2.0)
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lochhh
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Mar 7, 2024
niksirbi
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Mar 11, 2024
updates: - [github.com/astral-sh/ruff-pre-commit: v0.2.0 → v0.3.0](astral-sh/ruff-pre-commit@v0.2.0...v0.3.0) - [github.com/psf/black: 24.1.1 → 24.2.0](psf/black@24.1.1...24.2.0) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
niksirbi
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Mar 12, 2024
* Added `filtering.py` module, w/ draft `interp_pose()` & `filter_confidence()` fxns * Fix logging for operations in place * Renamed fxns to `interpolate_over_time()` and `filter_by_confidence` * Cleaned up code + corrected docstrings * Refactored `filtering.py` to movement base folder * Improved logging logic, fixed diagnostic report, removed in-place * Removed printing of diagnostic report * Updated dependency from `xarray` to `xarray[accel]` * Added testing for `filtering.py` * Minor fixes and clean-up * Reorganise Accessor (#122) * Check for expected `dims` and `data_vars` in dataset * Fix `missing_dim_dataset` fixture * Rename `poses` accessor to `move` * Rename `PoseAccessor` class to `MoveAccessor` * Rename `poses_accessor.py` to `move_accessor.py` * Move `move_accessor.py` to the top level * Fix accessor docstring formatting * Compute locomotion features (#106) * Draft compute velocity * Add test for displacement * Fix confidence values in `valid_pose_dataset` fixture * Refactor kinematics test and functions * Vectorise kinematic functions * Refactor repeated calls to compute magnitude + direction * Displacement to return 0 instead of NaN * Return x y components in kinematic functions * Refactor kinematics tests * Remove unnecessary instantiations * Improve time diff calculation * Prefix kinematics methods with `compute_` * Add kinematic properties to `PosesAccessor` * Update `test_property` docstring * Refactor `_vector` methods and kinematics tests * Update `expected_dataset` docstring * Rename `poses` to `move` in `PosesAccessor` * Refactor properties in `PosesAccessor` * Remove vector util functions and tests * Update `not_a_dataset` fixture description * Validate dataset upon accessor property access * Update `poses_accessor` test description * Validate input data in kinematic functions * Remove unused fixture * Parametrise kinematics tests * Set `compute_derivative` as internal function * Update `kinematics.py` docstrings * Add new modules to API docs * Update `move_accessor` docstrings * Rename `test_move_accessor` filename * Include M1 runners in CI and update install instructions (#125) * also test on macOS 14 M1 runner * conda install hdf5 * Add dependabot config (#128) * Bump actions/cache from 3 to 4 (#130) Bumps [actions/cache](https://github.com/actions/cache) from 3 to 4. - [Release notes](https://github.com/actions/cache/releases) - [Changelog](https://github.com/actions/cache/blob/main/RELEASES.md) - [Commits](actions/cache@v3...v4) --- updated-dependencies: - dependency-name: actions/cache dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * [pre-commit.ci] pre-commit autoupdate (#131) updates: - [github.com/astral-sh/ruff-pre-commit: v0.2.0 → v0.3.0](astral-sh/ruff-pre-commit@v0.2.0...v0.3.0) - [github.com/psf/black: 24.1.1 → 24.2.0](psf/black@24.1.1...24.2.0) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * Add codecov token to test_and_deploy.yml (#129) * Add codecov token to test_and_deploy.yml * use test action from main branch * switch back to using v2 of the test action * tweaked phrasing in docstrings * added filtering functions to API index * add note about default confidence threshold * rename and reorganise filter_diagnostics as report_nan_values * use xarray's copy method * max_gaps is in seconds and also works at edges * use xarray's built-in isnull method * added sphinx-gallery example for filtering and interpolation --------- Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: Chang Huan Lo <[email protected]> Co-authored-by: Niko Sirmpilatze <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
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