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Add --phasing-track to cooltools compartment calling

enhancementNew feature or requestNew feature or request

Status: Open.

#232 In nf-core/hic;

· GuidoBarzaghi opened on Sep 3, 2025

ERROR ~ * --res_zoomify: expected type: String, found: Integer (5000)

bugSomething isn't workingSomething isn't working

Status: Open.

#229 In nf-core/hic;

· GuidoBarzaghi opened on Jun 24, 2025

MATPLOTLIB warning derails parsing cooltools version in collated_versions.yml during NFCORE_HIC:HIC:CUSTOM_DUMPSOFTWAREVERSIONS

bugSomething isn't workingSomething isn't working

Status: Open.

#227 In nf-core/hic;

· leipzig opened on Jun 12, 2025

Improve pipeline for Arima Hi-C protocol

bugSomething isn't workingSomething isn't working

Status: Open.

#225 In nf-core/hic;

· FranBonath opened on Jun 3, 2025

· 

version-2.2.0

get_restriction_fragments tag fails on AWS

Status: Open.

Bug

#224 In nf-core/hic;

· edmundmiller opened on May 15, 2025

Merging replicates for analysis

enhancementNew feature or requestNew feature or request

Status: Open.

#223 In nf-core/hic;

· aperreault opened on May 7, 2025

MultiQC does not report all samples

bugSomething isn't workingSomething isn't working

Status: Open.

#221 In nf-core/hic;

· Alessandro201 opened on Apr 29, 2025

Compress .allValidPairs and .txt files

enhancementNew feature or requestNew feature or request

Status: Open.

#220 In nf-core/hic;

· Alessandro201 opened on Apr 28, 2025

ERROR ~ Error executing process > 'NFCORE_HIC:HIC:COOLER:COOLER_MAKEBINS (null})'

bugSomething isn't workingSomething isn't working

Status: Open.

#218 In nf-core/hic;

· zxtzhangqian-float opened on Apr 9, 2025

JSON schema: Hic

Status: Open.

#217 In nf-core/hic;

· jen-reeve opened on Mar 25, 2025

Bin size parameter not read

bugSomething isn't workingSomething isn't working

Status: Open.

#216 In nf-core/hic;

· aperreault opened on Mar 11, 2025

GET_RESTRICTION_FRAGMENTS cannot read compressed genome file

bugSomething isn't workingSomething isn't working

Status: Open.

#215 In nf-core/hic;

· AnttonLA opened on Feb 14, 2025