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Merged
javfg merged 2 commits into from
Feb 24, 2026
Merged

feat: remove epiraction from config #185

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65446a3
feat: remove epiraction from config
project-defiant Feb 24, 2026
2fb98cb
chore: bump version
project-defiant Feb 24, 2026
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19 changes: 0 additions & 19 deletions config.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -921,22 +921,3 @@ steps:
source: https://raw.githubusercontent.com/opentargets/target_engine/main/src/data_flow/phenotypeScores/20230825_mousePheScores.csv
destination: input/target_engine/mouse_pheno_scores.csv
##################################################################################################

#: EPIRACTION STEP :##############################################################################
epiraction:
- name: copy encode epiraction manifest
source: https://www.encodeproject.org/report.tsv?type=File&searchTerm=epiraction+thresholded&output_type=thresholded+element+gene+links&status=released&limit=all
destination: input/epiraction/epiraction_manifest.tsv

- name: crawl_encode epiraction manifest
requires:
- copy encode epiraction manifest
source: input/epiraction/epiraction_manifest.tsv
destination: input/epiraction/source_list_file.txt

- name: copy_many encode epiraction datasets
requires:
- crawl_encode epiraction manifest
source_list_file: input/epiraction/source_list_file.txt
destination: input/epiraction/datasets
##################################################################################################
2 changes: 1 addition & 1 deletion pyproject.toml
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@@ -1,6 +1,6 @@
[project]
name = "PIS"
version = "26.03.0-dev.3"
version = "26.03.0-dev.4"
description = "Open Targets Pipeline Input Stage"
readme = "README.md"
requires-python = ">=3.11,<3.14"
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