Skip to content

add clinical_report step#186

Merged
DSuveges merged 1 commit intomainfrom
il-clinical
Mar 2, 2026
Merged

add clinical_report step#186
DSuveges merged 1 commit intomainfrom
il-clinical

Conversation

@ireneisdoomed
Copy link
Copy Markdown
Contributor

This PR downloads input data necessary to run the clinical_report downstream without configuration changes

For the time being, it downloads all files from gs://ot-team/irene/clinical_mining/2026-03-02/input/clinical_report maintaining the folders structure

Missing: for PIS to be able to pull data from a database directly

@ireneisdoomed ireneisdoomed requested a review from DSuveges March 2, 2026 11:14
Copy link
Copy Markdown
Contributor

@DSuveges DSuveges left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Thank you! This PR defines a new PIS step to pull clinical report inputs from a pre-defined GS:// location.

@DSuveges DSuveges merged commit 53942e9 into main Mar 2, 2026
3 checks passed
@javfg javfg deleted the il-clinical branch March 3, 2026 12:12
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

2 participants