v26.03.0

This is the PTS version used for Open Targets 26.03 release.

What's Changed

• fix: mouse phenotype literature extraction by @DSuveges in #53
• Fix transform to take source/destination as dict by @javfg in #58
• Port association otF step to PTS + adding novelty by @DSuveges in #60
• fix: regex and raw strings by @DSuveges in #61
• Adding VEP view logic by @DSuveges in #51
• deduplication of diseases by @DSuveges in #57
• chore: update ClinVar scoring by @DSuveges in #62
• Refactor timeseries by @DSuveges in #56
• fix: recursive l2g loading by @DSuveges in #65
• Updates to use Otter 26 by @javfg in #63
• Feature/go-migration by @polrus in #32
• fix(evidence post-process): resolve evidence dating issue by @DSuveges in #66
• 4247 drug adjustments by @d0choa in #55
• chore: allow for docker to build clinical pipeline from github by @project-defiant in #67
• fix: make rule to identify high confidence indications more strict by @ireneisdoomed in #68
• fix: resolving circular dependencies in MoA steps by @DSuveges in #69
• chore(transformers): all transformers should accpect settings parameter even if ignores it by @DSuveges in #70
• chore: adding gcsfs as dependency by @DSuveges in #71
• Keep work inside work path by @javfg in #72
• Il read cr files by @ireneisdoomed in #73
• fix: read ttd txt through otter and split reading from report extraction by @ireneisdoomed in #74
• fix: return flag_indirect_primary_purpose by @ireneisdoomed in #75
• Filter ensembl genes for canonical chromosomes in pts by @DSuveges in #76
• fix: disease ontology cleanup by @DSuveges in #77
• fix(evidence_clinical_precedence): adding direction on target column by @DSuveges in #79
• fix: update flag_unvalidated_indication by @ireneisdoomed in #78
• consider chembl indications for clinical flagging by @ireneisdoomed in #80
• enhancements to the drug molecule dataset by @ireneisdoomed in #81
• fix nulls in the diseases column of the drug warnings reports by @ireneisdoomed in #82
• feat: adding timeseries view generation by @DSuveges in #83
• fix: select all needed cols in chembl_drug_warning by @ireneisdoomed in #84
• fix(association): disease propagation made datasource specific by @DSuveges in #85
• fix: correct is_drug filter to include clinical report drugs by @ireneisdoomed in #88
• fix: propagating therapeutic area by @DSuveges in #86
• fix: target assignment in moa by @DSuveges in #90
• fix: disease ontology work by @DSuveges in #91
• update drug max stage to score dictionary in target prioritisation by @ireneisdoomed in #92

New Contributors

• @polrus made their first contribution in #32

Full Changelog: v25.12.1...v26.03.0