This is the PTS version used for Open Targets 26.03 release.
What's Changed
- fix: mouse phenotype literature extraction by @DSuveges in #53
- Fix transform to take source/destination as dict by @javfg in #58
- Port association otF step to PTS + adding novelty by @DSuveges in #60
- fix: regex and raw strings by @DSuveges in #61
- Adding VEP view logic by @DSuveges in #51
- deduplication of diseases by @DSuveges in #57
- chore: update ClinVar scoring by @DSuveges in #62
- Refactor timeseries by @DSuveges in #56
- fix: recursive l2g loading by @DSuveges in #65
- Updates to use Otter 26 by @javfg in #63
- Feature/go-migration by @polrus in #32
- fix(evidence post-process): resolve evidence dating issue by @DSuveges in #66
- 4247 drug adjustments by @d0choa in #55
- chore: allow for docker to build clinical pipeline from github by @project-defiant in #67
- fix: make rule to identify high confidence indications more strict by @ireneisdoomed in #68
- fix: resolving circular dependencies in MoA steps by @DSuveges in #69
- chore(transformers): all transformers should accpect settings parameter even if ignores it by @DSuveges in #70
- chore: adding gcsfs as dependency by @DSuveges in #71
- Keep work inside work path by @javfg in #72
- Il read cr files by @ireneisdoomed in #73
- fix: read ttd txt through otter and split reading from report extraction by @ireneisdoomed in #74
- fix: return
flag_indirect_primary_purposeby @ireneisdoomed in #75 - Filter ensembl genes for canonical chromosomes in pts by @DSuveges in #76
- fix: disease ontology cleanup by @DSuveges in #77
- fix(evidence_clinical_precedence): adding direction on target column by @DSuveges in #79
- fix: update flag_unvalidated_indication by @ireneisdoomed in #78
- consider chembl indications for clinical flagging by @ireneisdoomed in #80
- enhancements to the drug molecule dataset by @ireneisdoomed in #81
- fix nulls in the
diseasescolumn of the drug warnings reports by @ireneisdoomed in #82 - feat: adding timeseries view generation by @DSuveges in #83
- fix: select all needed cols in chembl_drug_warning by @ireneisdoomed in #84
- fix(association): disease propagation made datasource specific by @DSuveges in #85
- fix: correct
is_drugfilter to include clinical report drugs by @ireneisdoomed in #88 - fix: propagating therapeutic area by @DSuveges in #86
- fix: target assignment in moa by @DSuveges in #90
- fix: disease ontology work by @DSuveges in #91
- update drug max stage to score dictionary in target prioritisation by @ireneisdoomed in #92
New Contributors
Full Changelog: v25.12.1...v26.03.0