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@GenomicMedLab The Wagner/Chaudhari Laboratories at the Institute for Genomic Medicine

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    28 repositories

    • software-templates

      Public
      Cookiecutter templates for lab software projects
      Python
      •
      MIT License
      •0•0•16•1•Updated Jan 1, 2026Jan 1, 2026

    • cool-seq-tool

      Public
      bioinformaticsgenomics
      Python
      •
      MIT License
      •0•4•32•0•Updated Dec 30, 2025Dec 30, 2025

    • AnyVLM

      Public
      Python
      •
      Apache License 2.0
      •0•2•11•2•Updated Dec 30, 2025Dec 30, 2025

    • wags-tails

      Public
      Data acquisition tools for Wagnerds
      bioinformaticsgenomics-data
      Python
      •
      MIT License
      •0•1•15•1•Updated Dec 29, 2025Dec 29, 2025

    • agct

      Public
      Another Genome Conversion Tool: Python frontend to Rust chainfile crate
      bioinformaticsgenomics
      Python
      •
      MIT License
      •0•3•8•0•Updated Dec 26, 2025Dec 26, 2025

    • dcd_mapping

      Public archive
      AVE DCD Mapping
      Jupyter Notebook
      •
      MIT License
      •5•0•0•0•Updated Dec 22, 2025Dec 22, 2025

    • fda_pediatric_oncology_drug_approvals

      Public
      Python
      •0•0•4•0•Updated Dec 9, 2025Dec 9, 2025

    • variation-normalizer-manuscript

      Public
      Issue tracker for Variation Normalizer manuscript work
      Jupyter Notebook
      •
      MIT License
      •0•2•1•0•Updated Nov 4, 2025Nov 4, 2025

    • gks-conversion-tool

      Public
      An experimental python package for converting between GKS models and other resources (currently working on HL7v2)
      Makefile
      •
      Apache License 2.0
      •1•0•0•0•Updated Sep 5, 2025Sep 5, 2025

    • fda-nlp

      Public
      Jupyter Notebook
      •
      MIT License
      •0•0•7•0•Updated Jul 29, 2025Jul 29, 2025

    • regbot

      Public
      Python
      •
      MIT License
      •0•1•9•0•Updated Jul 17, 2025Jul 17, 2025

    • genomicmedlab.org

      Public archive
      Building a lab website
      HTML
      •
      Apache License 2.0
      •0•0•0•0•Updated Dec 23, 2024Dec 23, 2024

    • CSHL-Variant-Representation-and-Annotation

      Public archive
      This repo contains exercises for the CSHL 2024 Seqtec course
      MIT License
      •0•0•0•0•Updated Dec 9, 2024Dec 9, 2024

    • .github

      Public
      Organization-wide default community health files and configurations for GML repositories.
      MIT License
      •0•0•3•0•Updated Dec 3, 2024Dec 3, 2024

    • bioinformatics-python

      Public archive
      This repo contains exercises for the CSHL 2024 Seqtec course
      Jupyter Notebook
      •
      MIT License
      •1•1•1•0•Updated Nov 20, 2024Nov 20, 2024

    • variant-interpretation

      Public archive
      This repo contains exercises for the CSHL 2024 Seqtec course
      Jupyter Notebook
      •
      MIT License
      •1•0•0•0•Updated Nov 20, 2024Nov 20, 2024

    • seqrepo-rest-service

      Public
      OpenAPI-based REST interface to biological sequences and sequence metadata
      Python
      •
      Apache License 2.0
      •6•0•0•0•Updated Sep 25, 2024Sep 25, 2024

    • therapy_normalization_analysis

      Public archive
      Jupyter Notebook
      •0•0•3•0•Updated Jan 19, 2024Jan 19, 2024

    • fantasy-football-rulebook

      Public
      Rulebook for the annual Griffith / Wagner Labs Fantasy Football League
      Creative Commons Zero v1.0 Universal
      •1•0•1•0•Updated Aug 21, 2023Aug 21, 2023

    • w3id.org

      Public
      Website source code for w3id.org.
      HTML
      •1.5k•0•0•0•Updated Apr 4, 2023Apr 4, 2023

    • schema-automator

      Public archive
      Automated assistance for the schema development lifecycle
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •23•0•0•0•Updated Aug 23, 2022Aug 23, 2022

    • wagner-lab-issues

      Public archive
      General issues and tasks for the Wagner Lab.
      0•0•0•0•Updated Jun 1, 2022Jun 1, 2022

    • curated-gene-lists

      Public archive
      HTML
      •
      MIT License
      •0•0•4•0•Updated Mar 12, 2022Mar 12, 2022

    • tragedy

      Public archive
      Truly Resplendent Architecture for Genomic Evidence Discovery in YAML
      Python
      •
      Apache License 2.0
      •0•0•4•0•Updated Feb 24, 2022Feb 24, 2022

    • interop

      Public archive
      General discussion of topics related to interoperability
      HTML
      •4•0•0•0•Updated Dec 26, 2021Dec 26, 2021

    • phenopacket-schema

      Public archive
      Repository for the GA4GH inlined phenopacket schema
      Java
      •
      BSD 3-Clause "New" or "Revised" License
      •31•0•0•0•Updated May 7, 2021May 7, 2021

    • protobuf_testing

      Public
      Testing Google Protocol Buffers for use with VRS
      0•0•0•0•Updated Mar 18, 2021Mar 18, 2021

    • preferredlist

      Public archive
      Lists of genes and hotspots for filter pass-through inspection in variant interpretation
      MIT License
      •1•1•5•0•Updated Dec 1, 2020Dec 1, 2020