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    17 repositories

    • biomedical-data-science

      Public
      This repository contains materials, case studies, and project overview discussed during INFO 703/603 course by Dr. Jake Chen at UAB
      bioinformaticsinformaticsseasbiomedical-data-scienceaimed-lab
      MIT License
      •0•1•0•0•Updated Nov 11, 2025Nov 11, 2025

    • GeneTerrain-Web-APP

      Public
      TypeScript
      •0•0•0•0•Updated Oct 29, 2025Oct 29, 2025

    • KinoViz

      Public
      KinoViz: A User-Friendly Web Application for High-Throughput Kinome Profiling Analysis and Visualization in Cancer Research
      R
      •0•0•0•0•Updated Sep 20, 2025Sep 20, 2025

    • CM4AI

      Public
      Extension of CM4AI
      Jupyter Notebook
      •0•1•0•0•Updated Sep 17, 2025Sep 17, 2025

    • LlamaAffinity

      Public
      Antibody binding affinity prediction model.
      Jupyter Notebook
      •0•0•0•0•Updated Sep 16, 2025Sep 16, 2025

    • mondrian-map

      Public
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Aug 1, 2025Aug 1, 2025

    • DEMA

      Public
      Java
      •
      MIT License
      •0•1•0•0•Updated Jun 16, 2025Jun 16, 2025

    • info-703-2025

      Public
      Python
      •2•0•1•0•Updated May 8, 2025May 8, 2025

    • Temporal_GeneTerrain

      Public template
      Jupyter Notebook
      •0•0•0•0•Updated Apr 23, 2025Apr 23, 2025

    • Polar-Gini-Curve

      Public
      This is the source code for manucript Nguyen, T.M., Jeevan, J.J., Xu, N. and Chen, J.Y., 2021. Polar Gini Curve: a technique to discover gene expression spatial patterns from single-cell RNA-seq data. Genomics, Proteomics & Bioinformatics, 19(3), pp.493-503.
      MATLAB
      •1•2•0•0•Updated Jul 12, 2023Jul 12, 2023

    • WINNER

      Public
      This is the source code for manuscript: Nguyen, T. et al. Gene Prioritization in Network Biology with WINNER. The code rank the most important genes in a gene lists (seed genes) using their interactions, also expandable to non-seed (expanded) genes.
      MATLAB
      •0•0•0•0•Updated Feb 10, 2023Feb 10, 2023

    • gene-prioritization

      Public
      Gene prioritization based on network biology tools
      HTML
      •
      Apache License 2.0
      •0•0•0•0•Updated Feb 7, 2023Feb 7, 2023

    • aimed-lab.github.io

      Public
      MIT License
      •0•0•0•5•Updated Jan 24, 2023Jan 24, 2023

    • SEAS

      Public
      Statistical Enrichment Analysis of Samples (SEAS): a general-purpose tool to annotate metadata neighborhoods of biological samples
      HTML
      •
      MIT License
      •1•0•0•0•Updated Jul 29, 2022Jul 29, 2022

    • HIP2

      Public
      An online database of human plasma proteins from healthy individuals
      HTML
      •0•0•0•0•Updated Jul 25, 2022Jul 25, 2022

    • ProteoLens

      Public
      A visual analytic tool for multi-scale database-driven biological network data mining
      Other
      •0•0•0•0•Updated Jul 18, 2022Jul 18, 2022

    • PAGER-Web-APP

      Public
      R
      •0•0•0•0•Updated Nov 22, 2021Nov 22, 2021