Repositories list

• camelot

  Public
  Go

  •

  MIT License

  •0•1•0•0•Updated Dec 1, 2025Dec 1, 2025

• cztack

  Public
  The CZI infrastructure stack.

  HCL

  •

  MIT License

  •25•69•3•7•Updated Nov 29, 2025Nov 29, 2025

• single-cell-data-portal

  Public

  chanzuckerberg/single-cell-data-portal’s past year of commit activity
  The data portal supporting the submission, exploration, and management of projects and datasets to cellxgene.

  TypeScript

  •

  MIT License

  •15•80•252•14•Updated Nov 29, 2025Nov 29, 2025

• edu-design-system

  Public
  Design system for Learning Commons Projects

  reactdesign-systemstyle-dictionary

  TypeScript

  •

  MIT License

  •4•33•1•2•Updated Nov 28, 2025Nov 28, 2025

• model-template

  Public
  Model Init

  Python

  •

  MIT License

  •0•1•0•2•Updated Nov 27, 2025Nov 27, 2025

• sci-components

  Public
  2021 Science Design System Component Library

  reactcsstheme+ 1design-system

  TypeScript

  •

  MIT License

  •7•31•109•3•Updated Nov 27, 2025Nov 27, 2025

• aws-oidc

  Public
  AWS OIDC Federation

  Go

  •

  MIT License

  •5•18•0•7•Updated Nov 27, 2025Nov 27, 2025

• open-science

  Public
  curated links and customized materials to support biomedical researchers in implementing open science approaches

  trainingopen-sourcecomputational-biology+ 4open-sciencereproducibilitybiomedical-researchreproducible-computational-methods

  JavaScript

  •

  Other

  •3•11•40•1•Updated Nov 26, 2025Nov 26, 2025

• argo-helm-charts

  Public
  Smarty

  •

  MIT License

  •0•0•0•2•Updated Nov 26, 2025Nov 26, 2025

• cryoet-data-portal-backend

  Public
  CryoET Data Portal API server & ingestion scripts

  Python

  •

  MIT License

  •5•6•7•14•Updated Nov 26, 2025Nov 26, 2025

• cellxgene-census

  Public
  CZ CELLxGENE Discover Census

  Jupyter Notebook

  •

  MIT License

  •29•114•107•19•Updated Nov 26, 2025Nov 26, 2025

• octopi

  Public
  Search for Protein 3D Coordinates in CryoET Tomograms

  machine-learningdeep-learningbayesian-optimization+ 43d-segmentationcryo-et3d-unetvolumetric-segmentation

  Jupyter Notebook

  •

  Other

  •2•6•5•3•Updated Nov 25, 2025Nov 25, 2025

• cz-benchmarks

  Public
  cz-benchmarks is a package for standardized evaluation and comparison of machine learning models for biological applications.

  Python

  •

  Other

  •6•38•32•4•Updated Nov 25, 2025Nov 25, 2025

• axe-storybook-testing

  Public
  Command line interface for testing Storybook stories for accessibility.

  testingaccessibilityaxe

  TypeScript

  •

  MIT License

  •7•55•2•0•Updated Nov 25, 2025Nov 25, 2025

• saber

  Public
  Segment Organelles from Electron Microscopy Datasets with Segment-Anything 2

  computer-visiondeep-learningvolume-segmentation+ 2segmentation-modelssegment-anything

  Jupyter Notebook

  •

  MIT License

  •1•11•1•3•Updated Nov 24, 2025Nov 24, 2025

• single-cell-explorer

  Public
  Hosted version of cellxgene

  TypeScript

  •

  MIT License

  •4•20•61•4•Updated Nov 24, 2025Nov 24, 2025

• fogg

  Public
  Manage Infrastructure as Code with less pain.

  infrastructureterraforminfrastructure-as-code

  Go

  •

  MIT License

  •20•305•39•2•Updated Nov 24, 2025Nov 24, 2025

• happy

  Public
  Happy Path Deployment Tool

  kubernetesinfrastructureterraform

  Go

  •

  MIT License

  •3•18•13•29•Updated Nov 24, 2025Nov 24, 2025

• single-cell-curation

  Public
  Code and documentation for the curation of cellxgene datasets

  Python

  •

  MIT License

  •28•50•30•3•Updated Nov 23, 2025Nov 23, 2025

• cellxgene

  Public
  An interactive explorer for single-cell transcriptomics data

  visualizationdatavizscrna-seq+ 2scientifictranscriptomics

  JavaScript

  •

  MIT License

  •145•734•133•0•Updated Nov 23, 2025Nov 23, 2025

• delta-share

  Public
  Go

  •

  MIT License

  •0•1•0•12•Updated Nov 21, 2025Nov 21, 2025

• py2rely

  Public
  Tools for Running Relion5 Sub-Tomogram Refinement Through CLI

  Python

  •

  Other

  •0•1•0•2•Updated Nov 21, 2025Nov 21, 2025

• argus-artifacts

  Public
  MIT License

  •0•1•0•0•Updated Nov 20, 2025Nov 20, 2025

• homebrew-tap

  Public
  Ruby

  •2•3•2•1•Updated Nov 20, 2025Nov 20, 2025

• github-actions

  Public
  A collection of re-usable GitHub Actions

  HCL

  •

  MIT License

  •4•5•1•2•Updated Nov 20, 2025Nov 20, 2025

• go-misc

  Public
  miscellaneous go code

  Go

  •

  MIT License

  •3•7•1•4•Updated Nov 20, 2025Nov 20, 2025

• copick-server

  Public
  Python

  •2•0•0•4•Updated Nov 18, 2025Nov 18, 2025

• cellxgene-ontology-guide

  Public
  Notebook guide: https://github.com/chanzuckerberg/cellxgene-ontology-guide/blob/main/api/python/notebooks/Python%20API.ipynb

  Python

  •

  MIT License

  •1•9•11•6•Updated Nov 17, 2025Nov 17, 2025

• single-cell

  Public
  A collection of documents that reflect various design decisions that have been made for the cellxgene project.

  MIT License

  •2•6•15•7•Updated Nov 16, 2025Nov 16, 2025

• create-sds-app

  Public template
  Repo template for npx create-sds-app

  TypeScript

  •

  MIT License

  •1•4•0•2•Updated Nov 15, 2025Nov 15, 2025