Repositories list

• cryoet-data-portal

  Public
  CryoET Data Portal

  TypeScript

  •

  MIT License

  •13•24•274•18•Updated Aug 12, 2025Aug 12, 2025

• cz-benchmarks

  Public
  cz-benchmarks is a package for standardized evaluation and comparison of machine learning models for biological applications.

  Python

  •

  Other

  •5•17•48•19•Updated Aug 11, 2025Aug 11, 2025

• single-cell-data-portal

  Public
  The data portal supporting the submission, exploration, and management of projects and datasets to cellxgene.

  TypeScript

  •

  MIT License

  •15•75•254•14•Updated Aug 11, 2025Aug 11, 2025

• cztack

  Public
  The CZI infrastructure stack.

  HCL

  •

  MIT License

  •24•68•3•5•Updated Aug 11, 2025Aug 11, 2025

• cellxgene-census

  Public
  CZ CELLxGENE Discover Census

  Jupyter Notebook

  •

  MIT License

  •27•105•103•18•Updated Aug 11, 2025Aug 11, 2025

• github-actions

  Public
  A collection of re-usable GitHub Actions

  HCL

  •

  MIT License

  •4•5•1•8•Updated Aug 11, 2025Aug 11, 2025

• happy

  Public
  Happy Path Deployment Tool

  kubernetesinfrastructureterraform

  Go

  •

  MIT License

  •3•18•13•19•Updated Aug 11, 2025Aug 11, 2025

• single-cell-curation

  Public
  Code and documentation for the curation of cellxgene datasets

  Python

  •

  MIT License

  •28•47•27•5•Updated Aug 11, 2025Aug 11, 2025

• czid-web

  Public
  Infectious Disease Sequencing Platform

  scienceresearchbiology+ 12sequencingcomputational-biologynext-generation-sequencingbioinformatics-pipelineglobal-healthvirologyinfectious-diseases+ 5

  TypeScript

  •

  MIT License

  •27•87•0•6•Updated Aug 11, 2025Aug 11, 2025

• homebrew-tap

  Public
  Ruby

  •2•3•2•1•Updated Aug 11, 2025Aug 11, 2025

• data-guidance

  Public
  Data standards and policies

  MIT License

  •0•0•2•1•Updated Aug 11, 2025Aug 11, 2025

• argus-artifacts

  Public
  MIT License

  •0•1•0•1•Updated Aug 11, 2025Aug 11, 2025

• single-cell-explorer

  Public
  Hosted version of cellxgene

  TypeScript

  •

  MIT License

  •4•16•61•2•Updated Aug 11, 2025Aug 11, 2025

• go-misc

  Public
  miscellaneous go code

  Go

  •

  MIT License

  •3•7•1•1•Updated Aug 11, 2025Aug 11, 2025

• cellxgene

  Public
  An interactive explorer for single-cell transcriptomics data

  datavizscrna-seqtranscriptomics+ 2visualizationscientific

  JavaScript

  •

  MIT License

  •140•705•132•2•Updated Aug 11, 2025Aug 11, 2025

• camelot

  Public
  Go

  •

  MIT License

  •0•1•0•9•Updated Aug 11, 2025Aug 11, 2025

• delta-share

  Public
  Go

  •

  MIT License

  •0•0•0•12•Updated Aug 11, 2025Aug 11, 2025

• sci-components

  Public
  2021 Science Design System Component Library

  reactcsstheme+ 1design-system

  TypeScript

  •

  MIT License

  •7•31•107•5•Updated Aug 11, 2025Aug 11, 2025

• aws-oidc

  Public
  AWS OIDC Federation

  Go

  •

  MIT License

  •5•17•0•5•Updated Aug 11, 2025Aug 11, 2025

• blessclient

  Public
  Go client to negotiate SSH certificates

  czisshcertificate+ 3rsyncscpssh-agent

  Go

  •

  MIT License

  •17•65•8•4•Updated Aug 11, 2025Aug 11, 2025

• argo-helm-charts

  Public
  Smarty

  •0•0•0•3•Updated Aug 11, 2025Aug 11, 2025

• miniwdl

  Public
  Workflow Description Language developer tools & local runner

  wdlworkflow-description-language

  Python

  •

  MIT License

  •59•190•135•14•Updated Aug 11, 2025Aug 11, 2025

• patchstorm

  Public
  have agents write changes and automatically open PRs against multiple repositories directly from the command line

  Python

  •

  MIT License

  •0•0•0•2•Updated Aug 11, 2025Aug 11, 2025

• edu-design-system

  Public
  Design system for Education Projects

  reactdesign-systemstyle-dictionary

  TypeScript

  •

  MIT License

  •4•33•1•6•Updated Aug 11, 2025Aug 11, 2025

• fogg

  Public
  Manage Infrastructure as Code with less pain.

  terraforminfrastructure-as-codeinfrastructure

  Go

  •

  MIT License

  •19•300•38•1•Updated Aug 11, 2025Aug 11, 2025

• octopi

  Public
  Search for Protein 3D Coordinates in CryoET Tomograms

  machine-learningdeep-learningbayesian-optimization+ 33d-segmentationcryo-et3d-unet

  Jupyter Notebook

  •

  Other

  •1•4•0•1•Updated Aug 7, 2025Aug 7, 2025

• saber

  Public
  Segment Organelles from Electron Microscopy Datasets with Segment-Anything 2

  computer-visiondeep-learningsegmentation

  Jupyter Notebook

  •

  MIT License

  •1•4•1•0•Updated Aug 7, 2025Aug 7, 2025

• alhazen

  Public
  AI agents + toolkits for scientific knowledge

  scientific-knowledge-engineeringlandscape-analysislarge-language-models

  Jupyter Notebook

  •

  MIT License

  •2•32•1•1•Updated Aug 6, 2025Aug 6, 2025

• cryoet-data-portal-neuroglancer

  Public
  CryoET Data Portal Neuroglancer configuration helper

  Python

  •

  MIT License

  •2•1•1•4•Updated Aug 5, 2025Aug 5, 2025

• cellxgene-ontology-guide

  Public
  Notebook guide: https://github.com/chanzuckerberg/cellxgene-ontology-guide/blob/main/api/python/notebooks/Python%20API.ipynb

  Python

  •

  MIT License

  •1•7•10•5•Updated Aug 4, 2025Aug 4, 2025