chore(deps): update dependency snakemake to v9.6.2

[renovate]

This PR contains the following updates:

Package	Change	Age	Adoption	Passing	Confidence
snakemake	9.6.1 -> 9.6.2

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Release Notes

snakemake/snakemake (snakemake)

v9.6.2

Compare Source

Bug Fixes

• if workflow contains checkpoints, only use --allowed-rules to restrict whether jobs are considered to be run, not for the plain DAG computation (#​3640) (10b4ddf)

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Configuration

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[github-actions]

🦙 MegaLinter status: ⚠️ WARNING

Descriptor	Linter	Files	Fixed	Errors	Warnings	Elapsed time
✅ API	spectral	1		0	0	1.82s
⚠️ BASH	bash-exec	6		1	0	0.01s
✅ BASH	shellcheck	6		0	0	0.12s
✅ BASH	shfmt	6	0	0	0	0.08s
✅ COPYPASTE	jscpd	yes		no	no	2.91s
✅ DOCKERFILE	hadolint	131		0	0	27.34s
✅ JSON	jsonlint	20		0	0	0.19s
✅ JSON	v8r	22		0	0	16.07s
⚠️ MARKDOWN	markdownlint	269	0	306	0	19.41s
✅ MARKDOWN	markdown-table-formatter	269	0	0	0	146.1s
⚠️ PYTHON	bandit	222		67	0	6.3s
✅ PYTHON	black	222	0	0	0	4.18s
✅ PYTHON	flake8	222		0	0	2.17s
✅ PYTHON	isort	222	0	0	0	0.52s
✅ PYTHON	mypy	222		0	0	12.53s
✅ PYTHON	pylint	222		0	0	32.22s
✅ PYTHON	ruff	222	0	0	0	0.1s
✅ REPOSITORY	checkov	yes		no	no	38.8s
✅ REPOSITORY	git_diff	yes		no	no	0.06s
⚠️ REPOSITORY	grype	yes		30	no	31.27s
✅ REPOSITORY	secretlint	yes		no	no	8.95s
✅ REPOSITORY	syft	yes		no	no	2.65s
✅ REPOSITORY	trivy	yes		no	no	10.22s
✅ REPOSITORY	trivy-sbom	yes		no	no	22.93s
✅ REPOSITORY	trufflehog	yes		no	no	4.44s
✅ SPELL	cspell	730		0	0	14.23s
⚠️ SPELL	lychee	351		8	0	25.38s
✅ XML	xmllint	3	0	0	0	0.49s
✅ YAML	prettier	160	0	0	0	3.06s
✅ YAML	v8r	103		0	0	29.58s
✅ YAML	yamllint	161		0	0	3.61s

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