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BUG: read_hdf bad filtering in case of categorical string columns #39351
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BUG: read_hdf bad filtering in case of categorical string columns #39351
nofarm3
wants to merge
52
commits into
pandas-dev:master
from
nofarm3:read-hdf-returns-unexpected-values-for-categorical
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jreback
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Jan 24, 2021
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need a test pls
…has wrong number of columns (pandas-dev#39341)
yes, ofc. |
Co-authored-by: jreback <[email protected]>
…es-for-categorical' into read-hdf-returns-unexpected-values-for-categorical
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This bug happens when filtering on categorical string columns and choose a value which doesn't exist in the column.
Instead of returning an empty dataframe, we get some records.
It happens because of the usage in numpy
searchsorted(v, side="left")
that find indices where elements should be inserted to maintain order (and not 0 in case that the value doesn't exist), like was assumed in the code.I changed it to first the for the value, and use
searchsorted
only if value exists, I also added a test for this specific use case.I think in the long run, maybe we should refactor this area in the code since one function covers multiple use cases which makes it more complex to test.