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@SABiagini SABiagini commented Jun 19, 2025

Linked to #91

PR Checklist

  • Add the appropriate label to your PR (new package or package update).
  • The PR title is in the format Add/update package: {package_name}.
  • The PR description includes a link to the issue requesting the package its
    update. (Add to Linked to #XXX above.)

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SSF file Todo list

  • This PR contains a sequencingSourceFile (.ssf) for the requested
    package.
  • The name of the .ssf file(s) matches the package name (i.e.
    packages/2023_my_package/2023_my_package.ssf).
  • The .ssf file MUST contain a new line at the end of the file.
    A check for this exists in the CI. This check should pass before
    you continue with this list.
  • I confirm that the poseidon_IDs, udg, and library_built are filled
    and correct.
  • I made sure to leave notes where necessary to explain any special
    cases/judgement calls made for data entries.

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  • Comment @delphis-bot create recipe to this pull request to awaken
    Poseidon's trusty helper. (This should be repeated whenever changes are
    made to the SSF file contents).

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  • The file packages/{package_name}/{package_name}.tsv was added to the PR.
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  • The file packages/{package_name}/script_versions.txt was added to the
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  • The file packages/{package_name}/{package_name}.config was added to the
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Additional configuration

Additional configuration may be required when processing the data through nf-core/eager.
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add the relevant parameters within the params section at the end of the package config file.
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in a comment, or provide the relevant nf-core/eager parameters in the params section.

  • If any nf-core/eager parameters need to be altered from their defaults, I
    have commented so in this PR (or added the relevant parameters within the
    params section at the end of the package config file).

@SABiagini SABiagini changed the title Added SSF for 2025_Beneker_SintTruiden new package Add package: 2025_Beneker_SintTruiden Jun 19, 2025
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