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Summary

The Bug

When comparing Datasets with check_dim_order=False, the comparison would fail if individual variables had different dimension orders, even when comparing a Dataset to itself:

dataset = xr.Dataset({
    "foo": xr.DataArray(np.zeros([4, 5]), dims=("a", "b")),
    "bar": xr.DataArray(np.zeros([5, 4]), dims=("b", "a"))
})

# This would fail, but shouldn't:
xr.testing.assert_equal(dataset, dataset, check_dim_order=False)

The Fix

The solution transposes both objects to a canonical dimension order using the intersection of their dimensions. The ellipsis (...) handles any dimensions unique to either object:

common_dims = set(a.dims) & set(b.dims)
if common_dims:
    canonical_order = sorted(common_dims) + [...]
    return a.transpose(*canonical_order), b.transpose(*canonical_order)

This elegant approach works uniformly for Variables, DataArrays, and Datasets without special casing.

Test plan

  • Added test case test_assert_equal_dataset_check_dim_order that reproduces the issue
  • All existing tests pass
  • Verified fix works for both assert_equal and assert_allclose

🤖 Generated with Claude Code

…imension orders

Fixes pydata#10704

The bug: assert_equal with check_dim_order=False was failing when comparing
Datasets containing variables with different dimension orders. It would even
fail when comparing a Dataset to itself.

The fix: Transpose both objects to a canonical dimension order using the
intersection of their dimensions. The ellipsis (...) handles any dimensions
unique to either object, making the solution general and elegant.

🤖 Generated with [Claude Code](https://claude.ai/code)

Co-Authored-By: Claude <[email protected]>
Comment on lines 111 to 112
# DataTree case needs special handling - only transpose b
return a, map_over_datasets(lambda a, b: _maybe_transpose_dims(a, b)[1], a, b)
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I don't think this is correct.

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ok thanks, sorry for outsourcing finding this. we should find a better balance of using AI agents; I do worry about this sort of OSS interaction

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for example — if an AI agent writes the code, it needs to have 100% test coverage before a human is asked to review it

max-sixty and others added 9 commits September 8, 2025 15:16
- Use list(common_dims) instead of sorted(common_dims) since dimensions
  only need to be hashable, not sortable
- Add test case for datasets with non-sortable dimension names (e.g., int and str)
- Transpose both a and b to the same canonical order for consistency

🤖 Generated with [Claude Code](https://claude.ai/code)

Co-Authored-By: Claude <[email protected]>
- Add test for no common dimensions path
- Add test for Variable type specifically (not just DataArray)
- Now all code paths in maybe_transpose_dims are covered

🤖 Generated with [Claude Code](https://claude.ai/code)

Co-Authored-By: Claude <[email protected]>
The reviewer was correct - the DataTree handling was wrong. We were only
transposing b, but for consistency we need to transpose both a and b
to the same canonical order, just like we do for Dataset.

This fixes the issue and adds a comprehensive test case.

🤖 Generated with [Claude Code](https://claude.ai/code)

Co-Authored-By: Claude <[email protected]>
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check_dim_order=False not working well when passing xr.Dataset to xarray.testing.assert_equal
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