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docs: Fix call to pm.sample (#216) #588

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docs: Fix call to pm.sample (#216)

docs: Fix call to pm.sample (#216) #588

Workflow file for this run

.github/workflows/ci.yml at 00e6ced
name: CI
on:
push:
branches:
- main
- master
tags:
- "*"
pull_request:
workflow_dispatch:
permissions:
contents: read
jobs:
linux:
runs-on: ${{ matrix.platform.runner }}
strategy:
fail-fast: false
matrix:
platform:
- runner: ubuntu-22.04
target: x86_64
- runner: ubuntu-22.04-arm
target: aarch64
steps:
- uses: actions/checkout@v4
- name: Install uv
uses: astral-sh/setup-uv@v6
- uses: actions/setup-python@v5
with:
python-version: |
3.10
3.11
3.12
3.13
- name: Build wheels
uses: PyO3/maturin-action@v1
with:
target: ${{ matrix.platform.target }}
args: --release --out dist --interpreter 3.10 3.11 3.12 3.13 --zig
sccache: ${{ !startsWith(github.ref, 'refs/tags/') }}
manylinux: auto
before-script-linux: |
dnf install -y clang-libs clang || sudo apt install llvm-dev libclang-dev clang
- name: Upload wheels
uses: actions/upload-artifact@v4
with:
name: wheels-linux-${{ matrix.platform.target }}
path: dist
- name: pytest
shell: bash
run: |
set -e
python3 -m venv .venv
source .venv/bin/activate
uv pip install 'nutpie[stan]' --find-links dist --force-reinstall
uv pip install pytest pytest-timeout pytest-arraydiff
pytest -m "stan and not flow" --arraydiff
uv pip install 'nutpie[pymc]' --find-links dist --force-reinstall
uv pip install jax
pytest -m "pymc and not flow" --arraydiff
uv pip install 'nutpie[all]' --find-links dist --force-reinstall
pytest -m flow --arraydiff
# pyarrow doesn't currently seem to work on musllinux
#musllinux:
# runs-on: ${{ matrix.platform.runner }}
# strategy:
# fail-fast: false
# matrix:
# platform:
# - runner: ubuntu-22.04
# target: x86_64
# - runner: ubuntu-22.04
# target: aarch64
# steps:
# - uses: actions/checkout@v4
# - uses: actions/setup-python@v5
# with:
# python-version: "3.12"
# - name: Install uv
# uses: astral-sh/setup-uv@v6
# - name: Build wheels
# uses: PyO3/maturin-action@v1
# with:
# target: ${{ matrix.platform.target }}
# args: --release --out dist --find-interpreter
# sccache: ${{ !startsWith(github.ref, 'refs/tags/') }}
# manylinux: musllinux_1_2
# before-script-linux: |
# dnf install -y clang-libs clang || apt install llvm-dev libclang-dev clang
# - name: Upload wheels
# uses: actions/upload-artifact@v4
# with:
# name: wheels-musllinux-${{ matrix.platform.target }}
# path: dist
# - name: pytest
# if: ${{ startsWith(matrix.platform.target, 'x86_64') }}
# uses: addnab/docker-run-action@v3
# with:
# image: alpine:latest
# options: -v ${{ github.workspace }}:/io -w /io
# run: |
# set -e
# apk add py3-pip py3-virtualenv curl make clang
# curl -LsSf https://astral.sh/uv/install.sh | sh
# source $HOME/.local/bin/env
# python3 -m virtualenv .venv
# source .venv/bin/activate
# # No numba packages for alpine
# uv pip install 'nutpie[stan]' --find-links dist --force-reinstall
# uv pip install pytest
# pytest
# - name: pytest
# if: ${{ !startsWith(matrix.platform.target, 'x86') }}
# uses: uraimo/run-on-arch-action@v2
# with:
# arch: ${{ matrix.platform.target }}
# distro: alpine_latest
# githubToken: ${{ github.token }}
# install: |
# apk add py3-virtualenv curl make clang
# curl -LsSf https://astral.sh/uv/install.sh | sh
# source $HOME/.local/bin/env
# run: |
# set -e
# python3 -m virtualenv .venv
# source $HOME/.local/bin/env
# source .venv/bin/activate
# uv pip install pytest
# # No numba packages for alpine
# uv pip install 'nutpie[stan]' --find-links dist --force-reinstall
# pytest
windows:
runs-on: ${{ matrix.platform.runner }}
strategy:
matrix:
platform:
- runner: windows-latest
target: x64
steps:
- uses: actions/checkout@v4
- uses: actions/setup-python@v5
with:
python-version: |
3.10
3.11
3.12
3.13
architecture: ${{ matrix.platform.target }}
- name: Install uv
uses: astral-sh/setup-uv@v6
- name: Install LLVM and Clang
uses: KyleMayes/install-llvm-action@v2
with:
version: "15.0"
directory: ${{ runner.temp }}/llvm
- name: Set up TBB
if: matrix.os == 'windows-latest'
run: |
Add-Content $env:GITHUB_PATH "$(pwd)/stan/lib/stan_math/lib/tbb"
- name: Build wheels
uses: PyO3/maturin-action@v1
env:
LIBCLANG_PATH: ${{ runner.temp }}/llvm/lib
with:
target: ${{ matrix.platform.target }}
args: --release --out dist --find-interpreter
sccache: ${{ !startsWith(github.ref, 'refs/tags/') }}
- name: Upload wheels
uses: actions/upload-artifact@v4
with:
name: wheels-windows-${{ matrix.platform.target }}
path: dist
- name: pytest
if: ${{ !startsWith(matrix.platform.target, 'aarch64') }}
shell: bash
run: |
set -e
python3 -m venv .venv
source .venv/Scripts/activate
uv pip install "nutpie[stan]" --find-links dist --force-reinstall
uv pip install pytest pytest-timeout pytest-arraydiff
pytest -m "stan and not flow" --arraydiff
uv pip install "nutpie[pymc]" --find-links dist --force-reinstall
uv pip install jax
pytest -m "pymc and not flow" --arraydiff
uv pip install "nutpie[all]" --find-links dist --force-reinstall
pytest -m flow --arraydiff
macos:
runs-on: ${{ matrix.platform.runner }}
strategy:
fail-fast: false
matrix:
platform:
- runner: macos-13
target: x86_64
- runner: macos-14
target: aarch64
steps:
- uses: actions/checkout@v4
- uses: actions/setup-python@v5
with:
python-version: |
3.10
3.11
3.12
3.13
- name: Install uv
uses: astral-sh/setup-uv@v6
- uses: maxim-lobanov/setup-xcode@v1
with:
xcode-version: latest-stable
- name: Build wheels
uses: PyO3/maturin-action@v1
with:
target: ${{ matrix.platform.target }}
args: --release --out dist --find-interpreter
sccache: ${{ !startsWith(github.ref, 'refs/tags/') }}
- name: Upload wheels
uses: actions/upload-artifact@v4
with:
name: wheels-macos-${{ matrix.platform.target }}
path: dist
- name: pytest
run: |
set -e
python3 -m venv .venv
source .venv/bin/activate
uv pip install 'nutpie[stan]' --find-links dist --force-reinstall
uv pip install pytest pytest-timeout pytest-arraydiff
pytest -m "stan and not flow" --arraydiff
uv pip install 'nutpie[pymc]' --find-links dist --force-reinstall
uv pip install jax
pytest -m "pymc and not flow" --arraydiff
uv pip install 'nutpie[all]' --find-links dist --force-reinstall
pytest -m flow --arraydiff
sdist:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- name: Build sdist
uses: PyO3/maturin-action@v1
with:
command: sdist
args: --out dist
- name: Upload sdist
uses: actions/upload-artifact@v4
with:
name: wheels-sdist
path: dist
release:
name: Release
runs-on: ubuntu-latest
if: ${{ startsWith(github.ref, 'refs/tags/') || github.event_name == 'workflow_dispatch' }}
needs: [linux, windows, macos, sdist]
environment:
name: pypi
permissions:
# Use to sign the release artifacts
id-token: write
# Used to upload release artifacts
contents: write
# Used to generate artifact attestation
attestations: write
steps:
- uses: actions/download-artifact@v4
- name: Generate artifact attestation
uses: actions/attest-build-provenance@v2
with:
subject-path: "wheels-*/*"
- name: Publish to PyPI
if: ${{ startsWith(github.ref, 'refs/tags/') }}
uses: PyO3/maturin-action@v1
with:
command: upload
args: --non-interactive --skip-existing wheels-*/*
- name: Upload to GitHub Release
uses: softprops/action-gh-release@v2
with:
files: |
wasm-wheels/*.whl
prerelease: ${{ contains(github.ref, 'alpha') || contains(github.ref, 'beta') }}