2.6 - Tree Roots

2.6 - Tree Roots

Added

• #267 Add EnhancedVolcano plots and export to output results
• #275 Added workflow section to report with mermaid graph
• #272 Add gene biotypes from gtf to DE_tables and volcano plots

Changed

• #267 Export static and interactive plotly volcano plots
• #268 Apply EnhancedVolcano color code to plotly volcano plots
• #269 Put gprofiler manhattan plots in tabs
• #275 Changed report headers, citations, links
• #276 Adjusted text, fixed typos, --path_quote is deprecated
• #277 Version bump to 2.6
• #281 Prettify long contrast names in volcano plot titles
• #282 Apply text suggestion changes from review #279

Fixed

• #271 Fix colors in plotly volcano plots
• #273 Fix duplicate row.names in pathway analysis and max dimensions error
• #274 Fix colors volcano plotly, sample dist. heatmap sampleNames, header trim whitespaces
• #278 Fix summary contrast names
• #280 Fix thresholds and lines in volcano plots
• #283 Fix test config inputs