rgbif 3.7.0 - review #498
Merged
rgbif 3.7.0 - review #498
Conversation
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
added 14 commits
October 28, 2021 15:10
…ownload-pred_isnull
|
don't have time to review it, but thanks for asking anyway :) & thx for taking over! |
16.04 is no longer in standard support.
Avoids incorrect order of build resulting in this error: OE> unable to load shared object '/home/runner/work/_temp/Library/stringi/libs/stringi.so': OE> libicui18n.so.66: cannot open shared object file: No such file or directory
|
Apparently sf requires a special install on ubuntu. |
added 6 commits
February 7, 2022 09:30
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
Hello,
This is a pre-release of a new version of rgbif to push to CRAN.
I have made several changes since the last CRAN version, which are summarized below. I thought these changes justified a version bump from
rgbif 3.6.0torgbif 3.7.0.There is only one breaking change listed in DEFUNCT. Otherwise old code should work as expected.
This will be my first CRAN release of rgbif, so I would appreciate a review if possible.
@sckott
@vijaybarve
@MattBlissett
@peterdesmet
thanks!
John Waller
rgbif 3.7.0
There is a new rgbif maintainer: John Waller.
NEW FEATURES
derived_dataset(): New function to register a cleaned or modified dataset on GBIF for citation. (Derived datasets #467)name_backbone_checklist(): New function that takes a list, vector, or data.frame of scientific names and asynchronously matches them to the backbone. (name_backbone() ideas #475)pred_isnull(): New predicate function that includes NULL values from a column in the download. (Add support for is_null predicate in occ_download #489)occ_download.print(): Now prints out much more information including a DOI and citation. (gbif_citation() #494)DEFUNCT
gbif_citation.gbif(): it is no longer considered best practice to generate a citation fromocc_search()orocc_data(). We recommendocc_download()orderived_dataset()instead. (gbif_citation() #494)MINOR IMPROVEMENTS
occ_download_wait()andocc_download_meta(): now accept a class character download key directly. The keys does do not need to be class "occ_download". (occ_download_wait() and occ_download_meta() should accept download keys #487)name_backbone(): now returns new columns "verbatim_name", "verabtim_genus" ect. that the user has supplied. This makes it easier for the user to track what has been matched. The verbose argument also has been un-retired. Ifverbose=TRUE, more results will be returned in a single data.frame. (name_backbone() ideas #475)gbif_citation(): will now accept a download key directly.occ_download_get(): Does not throw an error if the data is already present andoverwrite=FALSE, it will just give a warning and return the already present dataset. This allows users to runocc_download_get(key) %>% occ_download_import()multiple times without re-downloading the same file withoverwrite=TRUE.download_predicate_dsl(): "publishingOrg" and "occurrenceId" now added as download keys. (add download predicate key for PUBLISHING_ORG #496)key_lkupnow includes GBIF-style uppercase keys as well. Sopred("TAXON_KEY",212)andpred("taxonKey",212)will both work.DOCUMENTATION
Wrote new articles highlighting new features and encouraging the use of
occ_download()overocc_search().New articles:
BUG FIXES
occ_download_import(): fixed bug related to select argument. (occ_download_import with 'select' #479)map_fetch(): fixed bug related tosp::CRS(Error in map_fetch related to sp::CRS #497)