Bump the uv-dependencies group across 1 directory with 8 updates

[dependabot]

Bumps the uv-dependencies group with 8 updates in the / directory:

Package	From	To
pandas	2.3.3	3.0.3
plotly	6.7.0	6.8.0
geojson	3.2.0	3.3.0
scikit-learn	1.8.0	1.9.0
pylint	4.0.5	4.0.6
pytest	9.0.3	9.1.1
mkdocstrings-python	2.0.3	2.0.5
ipykernel	7.2.0	7.3.0

Updates pandas from 2.3.3 to 3.0.3

Release notes

Sourced from pandas's releases.

pandas 3.0.3

We are pleased to announce the release of pandas 3.0.3. This is a patch release in the 3.0.x series and includes some regression fixes and bug fixes. We recommend that all users of the 3.0.x series upgrade to this version.

See the full whatsnew for a list of all the changes.

Pandas 3.0 supports Python 3.11 and higher. The release can be installed from PyPI:

python -m pip install --upgrade pandas==3.0.*

Or from conda-forge

conda install -c conda-forge pandas=3.0

Please report any issues with the release on the pandas issue tracker.

Thanks to all the contributors who made this release possible.

pandas 3.0.2

We are pleased to announce the release of pandas 3.0.2. This is a patch release in the 3.0.x series and includes some regression fixes and bug fixes. We recommend that all users of the 3.0.x series upgrade to this version.

See the full whatsnew for a list of all the changes.

Pandas 3.0 supports Python 3.11 and higher. The release can be installed from PyPI:

python -m pip install --upgrade pandas==3.0.*

Or from conda-forge

conda install -c conda-forge pandas=3.0

Please report any issues with the release on the pandas issue tracker.

Thanks to all the contributors who made this release possible.

pandas 3.0.1

We are pleased to announce the release of pandas 3.0.1. This is a patch release in the 3.0.x series and includes some regression fixes and bug fixes. We recommend that all users of the 3.0.x series upgrade to this version.

See the full whatsnew for a list of all the changes.

Pandas 3.0.0 supports Python 3.11 and higher. The release can be installed from PyPI:

python -m pip install --upgrade pandas==3.0.*

Or from conda-forge

... (truncated)

Commits

• 72f2fea RLS: 3.0.3 (#65590)
• 2897590 Backport PR #65436 on branch 3.0.x (Account for privatization of matplotlib `...
• 49894b5 Backport PR #65499 on branch 3.0.x (BUG: fix check if pyarrow is installed in...
• 1c6d1e3 [backport 3.0.x] PERF: remove special casing for zoneinfo in tz_localize_to_u...
• 2a54711 Backport PR #64379 on branch 3.0.x (PERF: improve performance with ZoneInfo t...
• 036bb7c Backport PR #65482 on branch 3.0.x (PERF: don't call unique on dtypes for che...
• bf4c182 Backport PR #65410 on branch 3.0.x (TST: also convert str index to object in ...
• dd02d75 [backport 3.0.x] BUG: keep fsspec OpenFile alive for chained URL reads (#6547...
• aef3d0f [backport 3.0.x] CI: lowercase types-pymysql/types-pyyaml to fix mamba 2.6.0 ...
• bb8e248 Backport PR #65399 on branch 3.0.x (DOC: fix source link for classes in the r...
• Additional commits viewable in compare view

Updates plotly from 6.7.0 to 6.8.0

Release notes

Sourced from plotly's releases.

v6.8.0

Added

• Add optional font parameter for make_subplots [#5393], with thanks to @​Zomtir for the contribution!

Fixed

• Fix issue where user-specified color_continuous_scale was ignored when template had autocolorscale=True [#5439], with thanks to @​antonymilne for the contribution!
• Use presence of COLAB_NOTEBOOK_ID env var to enable Colab renderer instead of testing import of google.colab [#5473], with thanks to @​kevineger for the contribution!
• Fix incorrect annotation placement for add_vline, add_hline, add_vrect, and add_hrect on datetime axes [#5508], with thanks to @​mosh3eb for the contribution!
• Update tests to be compatible with numpy 2.4 [#5522], with thanks to @​thunze for the contribution!
• Fix issue where js/ directory was unintentionally installed as a top-level Python package when installing plotly [#5587]
• Add default headers to be passed in to Kaleido v1.3.0 to avoid blocked Open Street Map tiles [#5588]
• Propagate the requested default_height/default_width to the outer wrapper div produced by to_html so that responsive (percentage) dimensions inherit from a sized parent container instead of collapsing to the plotly.js 450px fallback [#5591], with thanks to @​SharadhNaidu for the contribution!

Updated

• The __eq__ method for graph_objects classes now returns NotImplemented to give the other operand an opportunity to handle the comparison [#5547], with thanks to @​RazerM for the contribution!
• Update plotly.js from version 3.5.0 to version 3.6.0. See the plotly.js release notes for more information [#5608]. Notable changes include:
  • Add support for arrays for the pie property legendrank, so that it can be configured per slice [#7723]
  • Add hoversort layout attribute to sort unified hover label items by value [#7734]

Changelog

Sourced from plotly's changelog.

[6.8.0] - 2026-06-03

Added

• Add optional font parameter for make_subplots [#5393], with thanks to @​Zomtir for the contribution!

Fixed

• Fix issue where user-specified color_continuous_scale was ignored when template had autocolorscale=True [#5439], with thanks to @​antonymilne for the contribution!
• Use presence of COLAB_NOTEBOOK_ID env var to enable Colab renderer instead of testing import of google.colab [#5473], with thanks to @​kevineger for the contribution!
• Fix incorrect annotation placement for add_vline, add_hline, add_vrect, and add_hrect on datetime axes [#5508], with thanks to @​mosh3eb for the contribution!
• Update tests to be compatible with numpy 2.4 [#5522], with thanks to @​thunze for the contribution!
• Fix issue where js/ directory was unintentionally installed as a top-level Python package when installing plotly [#5587]
• Add default headers to be passed in to Kaleido v1.3.0 to avoid blocked Open Street Map tiles [#5588]
• Propagate the requested default_height/default_width to the outer wrapper div produced by to_html so that responsive (percentage) dimensions inherit from a sized parent container instead of collapsing to the plotly.js 450px fallback [#5591], with thanks to @​SharadhNaidu for the contribution!

Updated

• The __eq__ method for graph_objects classes now returns NotImplemented to give the other operand an opportunity to handle the comparison [#5547], with thanks to @​RazerM for the contribution!
• Update plotly.js from version 3.5.0 to version 3.6.0. See the plotly.js release notes for more information [#5608]. Notable changes include:
  • Add support for arrays for the pie property legendrank, so that it can be configured per slice [#7723]
  • Add hoversort layout attribute to sort unified hover label items by value [#7734]

Commits

• ea4eca8 Address PR feedback
• e57adbd Fix broken example
• b8c2bf4 Update Jupyter Lab extension files
• 2de1059 Update docs for release
• f94e304 Version changes for v6.8.0
• 7f2eb35 Merge pull request #5608 from plotly/cam/update-plotly.js-3.6.0
• f57cf96 Update command to run npm install for updateplotlyjs
• 1f26820 Update lock file
• 8f699a3 chore: Update plotly.js to v3.6.0
• f0755e5 Merge pull request #5605 from plotly/cam/pin-python-frontmatter
• Additional commits viewable in compare view

Updates geojson from 3.2.0 to 3.3.0

Changelog

Sourced from geojson's changelog.

3.3.0

• __all__ must be a sequence of strings: fix __init__.py and factory.py

  • jazzband/geojson#247

• remove simplejson

  • jazzband/geojson#246

• Add support for Python 3.14

  • jazzband/geojson#245

• Remove EOL Python version support

  • jazzband/geojson#244

• Update GH action versions for Node 24

  • jazzband/geojson#243

• fix: convert dict features to Feature objects in FeatureCollection

  • jazzband/geojson#242

Commits

• f14b852 3.3.0 version bump (#249)
• 3fba3cd __all__ must be a sequence of strings: fix __init__.py and factory.py (...
• eed8089 #238 remove simplejson (#246)
• 34a2699 fix: convert dict features to Feature objects in FeatureCollection (#242)
• caac499 add Python 3.14 support (#245)
• e85778a remove support for EOL Python versions and update testing deps accordingly (#...
• 38e5082 Update GH action versions for Node 24 (#243)
• See full diff in compare view

Updates scikit-learn from 1.8.0 to 1.9.0

Release notes

Sourced from scikit-learn's releases.

Scikit-learn 1.9.0

We're happy to announce the 1.9.0 release.

You can read the release highlights under https://scikit-learn.org/stable/auto_examples/release_highlights/plot_release_highlights_1_9_0.html and the long version of the change log under https://scikit-learn.org/stable/whats_new/v1.9.html

This release adds narwhals as a new dependency that will help to improve dataframe interoperability across the project.

This version supports Python versions 3.11 to 3.14.

You can upgrade with pip as usual:

pip install -U scikit-learn

The conda-forge builds can be installed using:

conda install -c conda-forge scikit-learn

Commits

• 77def0e trigger wheel builder [cd build]
• ee7c0b0 generate changelog
• 3d7fb04 bump version
• 8954e7b DOC Release highlights for 1.9 (#34147)
• 73a3eab Fix: Array-API - avoid failing for numpy fit + predict with sparse or array-l...
• 8839aae DOC Thread-safety requirement for open_listener message consumer callback (#3...
• 4d2476a DOC Refactor array API docs page (#34054)
• f9f812f 🔒 🤖 CI Update lock files for scipy-dev CI build(s) 🔒 🤖 ...
• d779dc3 🔒 🤖 CI Update lock files for free-threaded CI build(s) 🔒 :rob...
• 6a03cf0 🔒 🤖 CI Update lock files for array-api CI build(s) 🔒 🤖 ...
• Additional commits viewable in compare view

Updates pylint from 4.0.5 to 4.0.6

Commits

• 8a39635 Bump pylint to 4.0.6, update changelog (#11105)
• 150f23c [Backport maintenance/4.0.x] Allow digits in ParamSpec and TypeVarTuple names...
• 8b6251e [Backport maintenance/4.0.x] Fix crash when enum member inference fails (#11093)
• d57aadb [Backport maintenance/4.0.x] Fix implicit-str-concat false positive for mix...
• d9ea8d9 [Backport maintenance/4.0.x] Fix unnecessary-comprehension suggestion when ...
• cb1792a [Backport maintenance/4.0.x] Allow digits in TypeVar names for invalid-name c...
• ee2ab9a Handle InferenceError in decorator return analysis
• 5bb5498 [Backport maintenance/4.0.x] Fix crash in typecheck checker when metaclass ar...
• a940533 [Backport maintenance/4.0.x] Fix a crash in consider-using-enumerate for no...
• b7a873a [Backport maintenance/4.0.x] Fix crash in deprecated checker for non-string `...
• Additional commits viewable in compare view

Updates pytest from 9.0.3 to 9.1.1

Release notes

Sourced from pytest's releases.

9.1.1

pytest 9.1.1 (2026-06-19)

Bug fixes

• #14220: Fixed a logic bug in pytest.RaisesGroup which would might cause it to display incorrect "It matches FooError() which was paired with BarError" messages.
• #14591: Fixed a regression in pytest 9.1.0 which caused overriding a parametrized fixture with an indirect @​pytest.mark.parametrize to fail with "duplicate parametrization of '<fixture name>'".
• #14606: Fixed list-item typing errors from mypy in @pytest.mark.parametrize <pytest.mark.parametrize ref> argvalues parameter.
• #14608: Fixed a regression in pytest 9.1.0 where conftest.py files located in <invocation dir>/test* were no longer loaded as initial conftests when invoked without arguments. This could cause certain hooks (like pytest_addoption) in these files to not fire.

9.1.0

pytest 9.1.0 (2026-06-13)

Removals and backward incompatible breaking changes

• #14533: When using --doctest-modules, autouse fixtures with module, package or session scope that are defined inline in Python test modules (not plugins or conftests) will now possibly execute twice.

  If this is undesirable, move the fixture definition to a conftest.py file if possible.

  Technical explanation for those interested: When using --doctest-modules, pytest possibly collects Python modules twice, once as pytest.Module and once as a DoctestModule (depending on the configuration). Due to improvements in pytest's fixture implementation, if e.g. the DoctestModule collects a fixture, it is now visible to it only, and not to the Module. This means that both need to register the fixtures independently.

Deprecations (removal in next major release)

• #10819: Added a deprecation warning for class-scoped fixtures defined as instance methods (without @classmethod). Such fixtures set attributes on a different instance than the test methods use, leading to unexpected behavior. Use @classmethod decorator instead -- by yastcher.

  See 10819 and 14011.

• #12882: Calling request.getfixturevalue() <pytest.FixtureRequest.getfixturevalue> during teardown to request a fixture that was not already requested is now deprecated and will become an error in pytest 10.

  See dynamic-fixture-request-during-teardown for details.

• #13409: Using non-~collections.abc.Collection iterables (such as generators, iterators, or custom iterable objects) for the argvalues parameter in @pytest.mark.parametrize <pytest.mark.parametrize ref> and metafunc.parametrize <pytest.Metafunc.parametrize> is now deprecated.

  These iterables get exhausted after the first iteration, leading to tests getting unexpectedly skipped in cases such as running pytest.main() multiple times, using class-level parametrize decorators, or collecting tests multiple times.

  See parametrize-iterators for details and suggestions.

• #13946: The private config.inicfg attribute is now deprecated. Use config.getini() <pytest.Config.getini> to access configuration values instead.

  See config-inicfg for more details.

• #14004: Passing baseid to ~pytest.FixtureDef or nodeid strings to fixture registration APIs is now deprecated. These are internal pytest APIs that are used by some plugins.

... (truncated)

Commits

• cf470ec Prepare release version 9.1.1
• e0c8ce6 Merge pull request #14625 from pytest-dev/patchback/backports/9.1.x/a07c31a97...
• 1b82d16 Merge pull request #14624 from pytest-dev/patchback/backports/9.1.x/b375b79ec...
• 501c4bc Merge pull request #14596 from bluetech/doc-classmethod
• b61f588 Merge pull request #14622 from chrisburr/fix-14608-initial-conftest-test-subdir
• 9a567e0 [automated] Update plugin list (#14617) (#14618)
• ef8b299 Merge pull request #14620 from pytest-dev/patchback/backports/9.1.x/680f9f3ed...
• 66abd07 Merge pull request #14220 from bysiber/fix-stale-iexp-raisesgroup
• 79fbf93 Merge pull request #14612 from pytest-dev/patchback/backports/9.1.x/974ed48b6...
• 0d312eb Merge pull request #14611 from bluetech/parametrize-argvalues-typing
• Additional commits viewable in compare view

Updates mkdocstrings-python from 2.0.3 to 2.0.5

Release notes

Sourced from mkdocstrings-python's releases.

2.0.5

2.0.5 - 2026-06-19

Compare with 2.0.4

Bug Fixes

• Allow relative cross-references to work in summaries (abe2888 by Timothée Mazzucotelli). Issue-331
• Always display attribute values as they're written in the source (0334131 by Timothée Mazzucotelli). Issue-311

2.0.4

2.0.4 - 2026-06-05

Compare with 2.0.3

Bug Fixes

• Display Methods instead of Functions for category headings inside classes (7bf8b98 by Timothée Mazzucotelli). Issue-330

Changelog

Sourced from mkdocstrings-python's changelog.

2.0.5 - 2026-06-19

Compare with 2.0.4

Bug Fixes

• Allow relative cross-references to work in summaries (abe2888 by Timothée Mazzucotelli). Issue-331
• Always display attribute values as they're written in the source (0334131 by Timothée Mazzucotelli). Issue-311

2.0.4 - 2026-06-05

Compare with 2.0.3

Bug Fixes

• Display Methods instead of Functions for category headings inside classes (7bf8b98 by Timothée Mazzucotelli). Issue-330

Commits

• 1670ecb chore: Prepare release 2.0.5
• abe2888 fix: Allow relative cross-references to work in summaries
• 0334131 fix: Always display attribute values as they're written in the source
• 39311c7 docs: Lint docs
• 835a406 chore: Never fail type-checking (maintenance mode)
• dc6aa93 chore: Prepare release 2.0.4
• 7bf8b98 fix: Display Methods instead of Functions for category headings inside classes
• See full diff in compare view

Updates ipykernel from 7.2.0 to 7.3.0

Release notes

Sourced from ipykernel's releases.

v7.3.0

7.3.0

(Full Changelog)

New features added

• feat(displayhook): add register_hook/unregister_hook to ZMQShellDisplayHook #1522 (@​rgbkrk, @​minrk)
• Support ZMQ Curve for transport encryption #1515 (@​krassowski, @​Carreau, @​minrk)

Enhancements made

• Support new iPython system_raise_on_error flag in ZMQInteractiveShell #1496 (@​adityawasudeo, @​ianthomas23)
• pass cell_meta from do_execute to run_cell #1475 (@​erawn, @​P4X-ng, @​ianthomas23)

Bugs fixed

• Fix broken IPython Reference URL in help_links #1526 (@​goelakash, @​Carreau, @​JohanMabille, @​krassowski)
• Mark cell execution as failing when formatter errors out #1521 (@​krassowski, @​Carreau)
• Fix ENOTSOCK traceback when iopub socket closes during shutdown #1518 (@​Carreau, @​minrk)
• Bugfix: Ensure that we take a copy of the sys.modules before iterating over it #1514 (@​pelson, @​Carreau)

Maintenance and upkeep improvements

• build docs on latest python #1525 (@​Carreau)
• Fix recent debugpy failures #1524 (@​Carreau)
• Unpin Spinx now that typehints issue ought to be resolved #1517 (@​krassowski, @​Carreau)
• Fix downstream test: do not use editable install for ipyparallel #1516 (@​krassowski, @​Carreau)
• Linting fixes #1509 (@​ianthomas23)
• chore: update pre-commit hooks #1508 (@​Carreau)
• chore: update pre-commit hooks #1502 (@​ianthomas23)
• Removed pinning of virtualenv #1501 (@​JohanMabille)
• Fixed a flaky windows test #1500 (@​adityawasudeo, @​JohanMabille, @​ianthomas23)
• Switch from using nest-asyncio to nest-asyncio2 #1499 (@​ianthomas23)
• Temporary pin virtualenv < 21 #1498 (@​ianthomas23)
• Reintroduce changing base method to async #1497 (@​ianthomas23)
• chore: update pre-commit hooks #1495 (@​ianthomas23)

Other merged PRs

• Bump the actions group across 1 directory with 2 updates #1513 (@​Carreau, @​minrk)

Contributors to this release

The following people contributed discussions, new ideas, code and documentation contributions, and review. See our definition of contributors.

(GitHub contributors page for this release)

... (truncated)

Changelog

Sourced from ipykernel's changelog.

7.3.0

(Full Changelog)

New features added

• feat(displayhook): add register_hook/unregister_hook to ZMQShellDisplayHook #1522 (@​rgbkrk, @​minrk)
• Support ZMQ Curve for transport encryption #1515 (@​krassowski, @​Carreau, @​minrk)

Enhancements made

• Support new iPython system_raise_on_error flag in ZMQInteractiveShell #1496 (@​adityawasudeo, @​ianthomas23)
• pass cell_meta from do_execute to run_cell #1475 (@​erawn, @​P4X-ng, @​ianthomas23)

Bugs fixed

• Fix broken IPython Reference URL in help_links #1526 (@​goelakash, @​Carreau, @​JohanMabille, @​krassowski)
• Mark cell execution as failing when formatter errors out #1521 (@​krassowski, @​Carreau)
• Fix ENOTSOCK traceback when iopub socket closes during shutdown #1518 (@​Carreau, @​minrk)
• Bugfix: Ensure that we take a copy of the sys.modules before iterating over it #1514 (@​pelson, @​Carreau)

Maintenance and upkeep improvements

• build docs on latest python #1525 (@​Carreau)
• Fix recent debugpy failures #1524 (@​Carreau)
• Unpin Spinx now that typehints issue ought to be resolved #1517 (@​krassowski, @​Carreau)
• Fix downstream test: do not use editable install for ipyparallel #1516 (@​krassowski, @​Carreau)
• Linting fixes #1509 (@​ianthomas23)
• chore: update pre-commit hooks #1508 (@​Carreau)
• chore: update pre-commit hooks #1502 (@​ianthomas23)
• Removed pinning of virtualenv #1501 (@​JohanMabille)
• Fixed a flaky windows test #1500 (@​adityawasudeo, @​JohanMabille, @​ianthomas23)
• Switch from using nest-asyncio to nest-asyncio2 #1499 (@​ianthomas23)
• Temporary pin virtualenv < 21 #1498 (@​ianthomas23)
• Reintroduce changing base method to async #1497 (@​ianthomas23)
• chore: update pre-commit hooks #1495 (@​ianthomas23)

Other merged PRs

• Bump the actions group across 1 directory with 2 updates #1513 (@​Carreau, @​minrk)

Contributors to this release

The following people contributed discussions, new ideas, code and documentation contributions, and review. See our definition of contributors.

(GitHub contributors page for this release)

@​adityawasudeo (activity) | @​Carreau (activity) | @​erawn (activity) | @​goelakash (activity) | @​ianthomas23 (activity) | @​JohanMabille (activity) | @​krassowski (activity) | @​minrk (activity) | @​P4X-ng (activity) | @​pelson (activity) | @​rgbkrk (activity)

... (truncated)

Commits

• 5dbd5ce Publish 7.3.0
• 28e9cf8 chore: update pre-commit hooks (#1508)
• 4e4f82c Support ZMQ Curve for transport encryption (#1515)
• b64f597 Merge branch 'main' into curve-encryption
• 6fc8b58 Fix broken IPython Reference URL in help_links (#1526)
• cd6f460 Fix typing due to new jupyter_client version
• b0678ba Update pyproject.toml to depend on jupyter_client 8.9.0 rather than branch
• 2157ae7 Update tests to reflact rename to "auto"
• 336971e build docs on latest python (#1525)
• 7ecb521 Fix tests
• Additional commits viewable in compare view