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Process input in chunks in VCF writer

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Status: Merged (completed).

sgkit-dev/sgkitnumber 983

#983 In sgkit-dev/sgkit;

· by tomwhite was closed on Jan 4, 2023

Rename <code>dataset_to_vcf</code> to <code>write_vcf</code> for consistency with other IO …

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Status: Merged (completed).

sgkit-dev/sgkitnumber 1005

#1005 In sgkit-dev/sgkit;

· by tomwhite was closed on Jan 25, 2023

Replace <code>genotype_count</code> with <code>variant_genotype_count</code>

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Status: Merged (completed).

sgkit-dev/sgkitnumber 1002

#1002 In sgkit-dev/sgkit;

· by timothymillar was closed on Jan 30, 2023

Initial gene-ε implementation

Status: Merged (completed).

sgkit-dev/sgkitnumber 975

#975 In sgkit-dev/sgkit;

· by tomwhite was closed on Jan 25, 2023

Version our docs

documentationImprovements or additions to documentationImprovements or additions to documentation

Status: Closed (completed).

#669 In sgkit-dev/sgkit;

· by hammer was closed on Jan 11, 2023

Disable numba caching via environment variable

process + tools

Status: Closed (completed).

#869 In sgkit-dev/sgkit;

· by timothymillar was closed on Jan 16, 2023

VCF writer documentation

documentationImprovements or additions to documentationImprovements or additions to documentation

IOIssues related to reading and writing common third-party file formatsIssues related to reading and writing common third-party file formats

Status: Closed (completed).

#967 In sgkit-dev/sgkit;

· by tomwhite was closed on Jan 5, 2023

genotype_count_spec is inconsistent with VCF spec

Status: Closed (completed).

#911 In sgkit-dev/sgkit;

· by timothymillar was closed on Jan 30, 2023

Improve release notes

process + tools

Status: Closed (completed).

#948 In sgkit-dev/sgkit;

· by tomwhite was closed on Jan 10, 2023

Is there a diference between variables <code>dosage</code> and <code>call_dosage</code>

questionFurther information is requestedFurther information is requested

Status: Closed (completed).

#875 In sgkit-dev/sgkit;

· by timothymillar was closed on Jan 24, 2023