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@snakemake

Snakemake

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  1. snakemake snakemake Public

    This is the development home of the workflow management system Snakemake. For general information, see

    Python 2.5k 602

  2. snakemake-wrappers snakemake-wrappers Public

    This is the development home of the Snakemake wrapper repository, see

    Python 231 196

  3. snakefmt snakefmt Public

    The uncompromising Snakemake code formatter

    Python 173 34

  4. snakemake-github-action snakemake-github-action Public

    A Github action for running a Snakemake workflow

    59 14

  5. snakemake-executor-plugin-slurm snakemake-executor-plugin-slurm Public

    A Snakemake executor plugin for submitting jobs to a SLURM cluster

    Python 39 34

  6. snakemake-workflow-catalog snakemake-workflow-catalog Public

    A statically generated catalog of available Snakemake workflows

    Python 35 11

Repositories

Showing 10 of 62 repositories
  • snakemake-executor-plugin-kubernetes Public

    A snakemake executor plugin for submission of jobs to Kubernetes

    snakemake/snakemake-executor-plugin-kubernetes’s past year of commit activity
    Python 3 MIT 9 2 5 Updated Jul 16, 2025
  • snakemake-workflow-catalog Public

    A statically generated catalog of available Snakemake workflows

    snakemake/snakemake-workflow-catalog’s past year of commit activity
    Python 35 MIT 11 5 1 Updated Jul 14, 2025
  • snakemake Public

    This is the development home of the workflow management system Snakemake. For general information, see

    snakemake/snakemake’s past year of commit activity
    Python 2,527 MIT 602 1,129 (1 issue needs help) 90 Updated Jul 14, 2025
  • snakemake-wrappers Public

    This is the development home of the Snakemake wrapper repository, see

    snakemake/snakemake-wrappers’s past year of commit activity
    Python 231 196 17 24 Updated Jul 14, 2025
  • snakemake-interface-executor-plugins Public

    This package provides a stable interface for interactions between Snakemake and its executor plugins.

    snakemake/snakemake-interface-executor-plugins’s past year of commit activity
    Python 12 MIT 13 8 1 Updated Jul 11, 2025
  • snakemake-interface-report-plugins Public

    The interface for Snakemake report plugins.

    snakemake/snakemake-interface-report-plugins’s past year of commit activity
    Python 4 MIT 2 2 1 Updated Jul 11, 2025
  • snakemake-tutorial-data Public

    Example data for the official Snakemake tutorial

    snakemake/snakemake-tutorial-data’s past year of commit activity
    Dockerfile 9 22 0 2 Updated Jul 9, 2025
  • snakemake-image-kubeflow Public

    A Snakemake image for kubeflow

    snakemake/snakemake-image-kubeflow’s past year of commit activity
    Python 1 0 0 1 Updated Jul 4, 2025
  • snakemake-executor-plugin-slurm Public

    A Snakemake executor plugin for submitting jobs to a SLURM cluster

    snakemake/snakemake-executor-plugin-slurm’s past year of commit activity
    Python 39 MIT 34 37 9 Updated Jul 4, 2025
  • snakemake-interface-common Public

    Common functions and classes for Snakemake and its plugins

    snakemake/snakemake-interface-common’s past year of commit activity
    Python 0 MIT 4 2 1 Updated Jul 4, 2025
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