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St. Jude Children's Research Hospital

Finding Cures, Saving Children.

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  1. learngenomics.dev learngenomics.dev Public

    A guided, intuitive introduction to genomics for software engineers. Curated by the community.

    JavaScript 373 36

  2. ROSE ROSE Public

    ROSE: RANK ORDERING OF SUPER-ENHANCERS

    Python 50 14

  3. CICERO CICERO Public

    CICERO: a versatile method for detecting complex and diverse driver fusions using cancer RNA sequencing data.

    Perl 39 22

  4. ChIPseqSpikeInFree ChIPseqSpikeInFree Public

    A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications

    R 33 13

  5. proteinpaint proteinpaint Public

    Data visualization and analysis framework focused on phenotype-molecular data integration at cohort level.

    JavaScript 33 9

  6. RNAIndel RNAIndel Public

    Somatic indel discovery tool for tumor RNA-Seq data.

    Python 22 8

Repositories

Showing 10 of 49 repositories
  • proteinpaint Public

    Data visualization and analysis framework focused on phenotype-molecular data integration at cohort level.

    stjude/proteinpaint’s past year of commit activity
    JavaScript 33 9 111 (1 issue needs help) 2 Updated Jul 22, 2025
  • HiLOW Public

    HiC Looping Organization Workflow

    stjude/HiLOW’s past year of commit activity
    WDL 0 0 1 1 Updated Jul 10, 2025
  • LASER Public
    stjude/LASER’s past year of commit activity
    R 0 GPL-2.0 0 0 0 Updated Jul 1, 2025
  • Dowen_Fan Public

    Abraham lab ChIA-PET analysis pipeline

    stjude/Dowen_Fan’s past year of commit activity
    Shell 0 GPL-2.0 0 0 0 Updated Jul 1, 2025
  • BOUQUET Public
    stjude/BOUQUET’s past year of commit activity
    R 0 GPL-2.0 0 0 0 Updated Jul 1, 2025
  • WARDEN Public

    Source code for the WARDEN DNAnexus apps

    stjude/WARDEN’s past year of commit activity
    Python 1 1 0 0 Updated May 16, 2025
  • CICERO Public

    CICERO: a versatile method for detecting complex and diverse driver fusions using cancer RNA sequencing data.

    stjude/CICERO’s past year of commit activity
    Perl 39 22 7 0 Updated Apr 21, 2025
  • cis-x Public

    Search for activating regulatory variants in the tumor genome

    stjude/cis-x’s past year of commit activity
    Perl 14 Apache-2.0 8 4 0 Updated Apr 11, 2025
  • Retinal_Analysis_Vas Public

    Software and tools to perform Vasculature and DAPI analysis on mouse retina

    stjude/Retinal_Analysis_Vas’s past year of commit activity
    Jupyter Notebook 0 GPL-3.0 0 0 0 Updated Apr 4, 2025
  • fuzzion2_patgen Public

    tools for creating patterns for use with fuzzion2

    stjude/fuzzion2_patgen’s past year of commit activity
    Perl 0 Apache-2.0 0 0 0 Updated Feb 19, 2025